登録情報 | データベース: PDB / ID: 7ceg |
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タイトル | Crystal structure of the complex between mouse PTP delta and neuroligin-3 |
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要素 | - Isoform C of Receptor-type tyrosine-protein phosphatase delta
- Neuroligin-3
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キーワード | HYDROLASE/CELL ADHESION / synapse organization / trans-synaptic complex / esterase domain / HYDROLASE-CELL ADHESION complex |
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機能・相同性 | 機能・相同性情報
positive regulation of AMPA receptor activity / rhythmic synaptic transmission / negative regulation of dendritic spine morphogenesis / trans-synaptic signaling / Receptor-type tyrosine-protein phosphatases / Neurexins and neuroligins / Synaptic adhesion-like molecules / trans-synaptic signaling by trans-synaptic complex / regulation of terminal button organization / positive regulation of synaptic vesicle clustering ...positive regulation of AMPA receptor activity / rhythmic synaptic transmission / negative regulation of dendritic spine morphogenesis / trans-synaptic signaling / Receptor-type tyrosine-protein phosphatases / Neurexins and neuroligins / Synaptic adhesion-like molecules / trans-synaptic signaling by trans-synaptic complex / regulation of terminal button organization / positive regulation of synaptic vesicle clustering / postsynaptic membrane assembly / presynaptic membrane assembly / synaptic membrane adhesion / neuron cell-cell adhesion / regulation of respiratory gaseous exchange by nervous system process / neurexin family protein binding / negative regulation of excitatory postsynaptic potential / positive regulation of dendritic spine morphogenesis / regulation of postsynaptic density assembly / positive regulation of glutamate receptor signaling pathway / negative regulation of receptor signaling pathway via JAK-STAT / regulation of dendritic spine morphogenesis / positive regulation of dendrite morphogenesis / regulation of AMPA receptor activity / regulation of NMDA receptor activity / inhibitory postsynaptic potential / axon extension / regulation of long-term synaptic potentiation / positive regulation of synapse assembly / heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules / social behavior / oligodendrocyte differentiation / endocytic vesicle / excitatory synapse / positive regulation of excitatory postsynaptic potential / regulation of immune response / regulation of synaptic transmission, glutamatergic / cell adhesion molecule binding / protein-tyrosine-phosphatase / receptor-mediated endocytosis / positive regulation of synaptic transmission, glutamatergic / protein tyrosine phosphatase activity / hippocampal mossy fiber to CA3 synapse / excitatory postsynaptic potential / modulation of chemical synaptic transmission / synapse organization / visual learning / Schaffer collateral - CA1 synapse / long-term synaptic potentiation / neuron differentiation / presynaptic membrane / postsynaptic membrane / signaling receptor binding / synapse / glutamatergic synapse / cell surface類似検索 - 分子機能 Receptor-type tyrosine-protein phosphatase delta, PTPase domain, repeat 1 / Neuroligin / : / : / Carboxylesterase type B, conserved site / Carboxylesterases type-B signature 2. / Carboxylesterase, type B / Carboxylesterase family / Immunoglobulin domain / Protein tyrosine phosphatase, catalytic domain ...Receptor-type tyrosine-protein phosphatase delta, PTPase domain, repeat 1 / Neuroligin / : / : / Carboxylesterase type B, conserved site / Carboxylesterases type-B signature 2. / Carboxylesterase, type B / Carboxylesterase family / Immunoglobulin domain / Protein tyrosine phosphatase, catalytic domain / PTP type protein phosphatase domain profile. / Protein-tyrosine phosphatase / Tyrosine-specific protein phosphatase, PTPase domain / Immunoglobulin I-set / Immunoglobulin I-set domain / Protein-tyrosine phosphatase, catalytic / Protein tyrosine phosphatase, catalytic domain motif / Tyrosine specific protein phosphatases active site. / Protein-tyrosine phosphatase, active site / Tyrosine-specific protein phosphatases domain / Tyrosine specific protein phosphatases domain profile. / Protein-tyrosine phosphatase-like / Fibronectin type III domain / Fibronectin type 3 domain / Immunoglobulin subtype 2 / Immunoglobulin C-2 Type / Fibronectin type-III domain profile. / Fibronectin type III / Fibronectin type III superfamily / Immunoglobulin subtype / Immunoglobulin / Alpha/Beta hydrolase fold / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold / Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta類似検索 - ドメイン・相同性 Receptor-type tyrosine-protein phosphatase delta / Neuroligin-3類似検索 - 構成要素 |
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生物種 |  Mus musculus (ハツカネズミ) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.85 Å |
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データ登録者 | Yamagata, A. / Yoshida, T. / Shiroshima, T. / Maeda, A. / Fukai, S. |
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資金援助 | 日本, 4件 組織 | 認可番号 | 国 |
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Japan Society for the Promotion of Science (JSPS) | JP16H04749 | 日本 | Japan Society for the Promotion of Science (JSPS) | JP25293057 | 日本 | Japan Society for the Promotion of Science (JSPS) | JP24247014 | 日本 | Japan Science and Technology | JPMJCR12M5 | 日本 |
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引用 | ジャーナル: Nat Commun / 年: 2021 タイトル: Canonical versus non-canonical transsynaptic signaling of neuroligin 3 tunes development of sociality in mice. 著者: Yoshida, T. / Yamagata, A. / Imai, A. / Kim, J. / Izumi, H. / Nakashima, S. / Shiroshima, T. / Maeda, A. / Iwasawa-Okamoto, S. / Azechi, K. / Osaka, F. / Saitoh, T. / Maenaka, K. / Shimada, T. ...著者: Yoshida, T. / Yamagata, A. / Imai, A. / Kim, J. / Izumi, H. / Nakashima, S. / Shiroshima, T. / Maeda, A. / Iwasawa-Okamoto, S. / Azechi, K. / Osaka, F. / Saitoh, T. / Maenaka, K. / Shimada, T. / Fukata, Y. / Fukata, M. / Matsumoto, J. / Nishijo, H. / Takao, K. / Tanaka, S. / Okabe, S. / Tabuchi, K. / Uemura, T. / Mishina, M. / Mori, H. / Fukai, S. |
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履歴 | 登録 | 2020年6月23日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2021年2月24日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2021年4月7日 | Group: Database references / カテゴリ: citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _citation_author.identifier_ORCID |
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改定 1.2 | 2023年11月29日 | Group: Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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改定 1.3 | 2024年11月20日 | Group: Structure summary カテゴリ: pdbx_entry_details / pdbx_modification_feature Item: _pdbx_entry_details.has_protein_modification |
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