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Open data
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Basic information
Entry | Database: PDB / ID: 7a7m | ||||||
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Title | rsGreen0.7b in the green-on state | ||||||
![]() | Green fluorescent protein | ||||||
![]() | FLUORESCENT PROTEIN / Reversible photoswitchable fluorescent protein | ||||||
Function / homology | Green fluorescent protein, GFP / Green fluorescent protein-related / Green fluorescent protein / Green fluorescent protein / bioluminescence / generation of precursor metabolites and energy / Green fluorescent protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() ![]() | ||||||
![]() | De Zitter, E. / Dedecker, P. / Van Meervelt, L. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Authors: De Zitter, E. / Hugelier, S. / Duwe, S. / Vandenberg, W. / Tebo, A.G. / Van Meervelt, L. / Dedecker, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 70.2 KB | Display | ![]() |
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PDB format | ![]() | 48.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 432.2 KB | Display | ![]() |
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Full document | ![]() | 434.3 KB | Display | |
Data in XML | ![]() | 13.4 KB | Display | |
Data in CIF | ![]() | 19.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7a7kC ![]() 7a7lC ![]() 7a7nC ![]() 7a7oC ![]() 7a7pC ![]() 7a7qC ![]() 7a7rC ![]() 7a7sC ![]() 7a7tC ![]() 7a7uC ![]() 7a7vC ![]() 7a7wC ![]() 7a7xC ![]() 7a7yC ![]() 7a7zC ![]() 7a80C ![]() 7a81C ![]() 7a82C ![]() 7a83C ![]() 7a84C ![]() 7a85C ![]() 7a86C ![]() 7a87C ![]() 7a88C ![]() 7a89C ![]() 7a8aC ![]() 7a8bC ![]() 7a8cC ![]() 7a8dC ![]() 7a8eC ![]() 7a8fC ![]() 7a8gC ![]() 7a8hC ![]() 7a8iC ![]() 7a8jC ![]() 7a8kC ![]() 7a8lC ![]() 7a8mC ![]() 7a8nC ![]() 7a8oC ![]() 4xowS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 30685.439 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2 Å3/Da / Density % sol: 38.46 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / Details: 150 mM KBr 30 % PEG 2000 mme |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N | ||||||||||||||||||||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||||||||||||||||||||
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Sep 11, 2014 | ||||||||||||||||||||||||||||||
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||||||||||||||||||||
Radiation wavelength | Wavelength: 0.8856 Å / Relative weight: 1 | ||||||||||||||||||||||||||||||
Reflection | Resolution: 1.6→39.99 Å / Num. obs: 27495 / % possible obs: 97.7 % / Redundancy: 4.3 % / CC1/2: 0.998 / Rmerge(I) obs: 0.052 / Rpim(I) all: 0.028 / Rrim(I) all: 0.059 / Net I/σ(I): 15.4 / Num. measured all: 119169 | ||||||||||||||||||||||||||||||
Reflection shell | Diffraction-ID: 1
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-Phasing
Phasing | Method: ![]() | |||||||||
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Phasing MR |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4XOW Resolution: 1.6→39.99 Å / SU ML: 0.21 / Cross valid method: THROUGHOUT / σ(F): 1.36 / Phase error: 18.96
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 68.81 Å2 / Biso mean: 22.6457 Å2 / Biso min: 8.76 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 1.6→39.99 Å
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0
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