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Yorodumi- PDB-6zyu: Structure of the GluA2 ligand-binding domain (L483Y-N754S) in com... -
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-Basic information
Entry | Database: PDB / ID: 6zyu | |||||||||
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Title | Structure of the GluA2 ligand-binding domain (L483Y-N754S) in complex with glutamate and BPAM549 | |||||||||
Components | Glutamate receptor 2,Glutamate receptor 2 | |||||||||
Keywords | SIGNALING PROTEIN / GLUA2-LBD / GLUA2-S1S2J / AMPA RECEPTOR / LIGAND-BINDING DOMAIN / POSITIVE ALLOSTERIC MODULATOR / MEMBRANE PROTEIN / L483Y / N754S | |||||||||
Function / homology | Function and homology information spine synapse / dendritic spine neck / dendritic spine head / Activation of AMPA receptors / perisynaptic space / AMPA glutamate receptor activity / ligand-gated monoatomic cation channel activity / Trafficking of GluR2-containing AMPA receptors / response to lithium ion / extracellularly glutamate-gated ion channel activity ...spine synapse / dendritic spine neck / dendritic spine head / Activation of AMPA receptors / perisynaptic space / AMPA glutamate receptor activity / ligand-gated monoatomic cation channel activity / Trafficking of GluR2-containing AMPA receptors / response to lithium ion / extracellularly glutamate-gated ion channel activity / immunoglobulin binding / AMPA glutamate receptor complex / kainate selective glutamate receptor activity / ionotropic glutamate receptor complex / cellular response to glycine / asymmetric synapse / regulation of receptor recycling / Unblocking of NMDA receptors, glutamate binding and activation / glutamate receptor binding / positive regulation of synaptic transmission / extracellular ligand-gated monoatomic ion channel activity / glutamate-gated receptor activity / response to fungicide / glutamate-gated calcium ion channel activity / presynaptic active zone membrane / regulation of synaptic transmission, glutamatergic / ionotropic glutamate receptor binding / somatodendritic compartment / dendrite membrane / cellular response to brain-derived neurotrophic factor stimulus / ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential / cytoskeletal protein binding / dendrite cytoplasm / ionotropic glutamate receptor signaling pathway / SNARE binding / dendritic shaft / synaptic transmission, glutamatergic / synaptic membrane / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / PDZ domain binding / protein tetramerization / postsynaptic density membrane / establishment of protein localization / modulation of chemical synaptic transmission / Schaffer collateral - CA1 synapse / terminal bouton / receptor internalization / cerebral cortex development / synaptic vesicle membrane / synaptic vesicle / presynapse / signaling receptor activity / presynaptic membrane / amyloid-beta binding / growth cone / scaffold protein binding / chemical synaptic transmission / perikaryon / postsynaptic membrane / dendritic spine / postsynaptic density / neuron projection / axon / neuronal cell body / glutamatergic synapse / dendrite / synapse / protein-containing complex binding / protein kinase binding / cell surface / endoplasmic reticulum / protein-containing complex / identical protein binding / membrane / plasma membrane Similarity search - Function | |||||||||
Biological species | Rattus norvegicus (Norway rat) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 1.9 Å | |||||||||
Authors | Dorosz, J. / Christensen, K.M. / Kastrup, J.S. | |||||||||
Funding support | Denmark, 2items
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Citation | Journal: Acs Chem Neurosci / Year: 2021 Title: Development of Thiochroman Dioxide Analogues of Benzothiadiazine Dioxides as New Positive Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors. Authors: Etse, K.S. / Dorosz, J. / McLain Christensen, K. / Thomas, J.Y. / Botez Pop, I. / Goffin, E. / Colson, T. / Lestage, P. / Danober, L. / Pirotte, B. / Kastrup, J.S. / Francotte, P. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6zyu.cif.gz | 339.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6zyu.ent.gz | 275.9 KB | Display | PDB format |
PDBx/mmJSON format | 6zyu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6zyu_validation.pdf.gz | 1.1 MB | Display | wwPDB validaton report |
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Full document | 6zyu_full_validation.pdf.gz | 1.1 MB | Display | |
Data in XML | 6zyu_validation.xml.gz | 36.6 KB | Display | |
Data in CIF | 6zyu_validation.cif.gz | 53.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zy/6zyu ftp://data.pdbj.org/pub/pdb/validation_reports/zy/6zyu | HTTPS FTP |
-Related structure data
Related structure data | 3tkdS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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