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Yorodumi- PDB-6zfh: Structure of human galactokinase in complex with galactose and 2'... -
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Basic information
| Entry | Database: PDB / ID: 6zfh | ||||||
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| Title | Structure of human galactokinase in complex with galactose and 2'-(benzo[d]oxazol-2-ylamino)-7',8'-dihydro-1'H-spiro[cyclopentane-1,4'-quinazolin]-5'(6'H)-one | ||||||
Components | Galactokinase | ||||||
Keywords | TRANSFERASE / GHMP Kinase / Galactose metabolism / Inhibitor / Structural Genomics / Structural Genomics Consortium / SGC | ||||||
| Function / homology | Function and homology informationglycolytic process from galactose / Defective GALK1 causes GALCT2 / galactitol metabolic process / galactokinase / galactokinase activity / Galactose catabolism / galactose catabolic process via UDP-galactose, Leloir pathway / galactose binding / galactose metabolic process / extracellular exosome ...glycolytic process from galactose / Defective GALK1 causes GALCT2 / galactitol metabolic process / galactokinase / galactokinase activity / Galactose catabolism / galactose catabolic process via UDP-galactose, Leloir pathway / galactose binding / galactose metabolic process / extracellular exosome / ATP binding / membrane / cytoplasm / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.439 Å | ||||||
Authors | Bezerra, G.A. / Mackinnon, S. / Zhang, M. / Foster, W. / Bailey, H. / Arrowsmith, C. / Edwards, A. / Bountra, C. / Lai, K. / Yue, W.W. / Structural Genomics Consortium (SGC) | ||||||
| Funding support | United Kingdom, 1items
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Citation | Journal: Acs Chem.Biol. / Year: 2021Title: Fragment Screening Reveals Starting Points for Rational Design of Galactokinase 1 Inhibitors to Treat Classic Galactosemia. Authors: Mackinnon, S.R. / Krojer, T. / Foster, W.R. / Diaz-Saez, L. / Tang, M. / Huber, K.V.M. / von Delft, F. / Lai, K. / Brennan, P.E. / Arruda Bezerra, G. / Yue, W.W. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6zfh.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb6zfh.ent.gz | 944.3 KB | Display | PDB format |
| PDBx/mmJSON format | 6zfh.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6zfh_validation.pdf.gz | 1.8 MB | Display | wwPDB validaton report |
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| Full document | 6zfh_full_validation.pdf.gz | 1.8 MB | Display | |
| Data in XML | 6zfh_validation.xml.gz | 109.7 KB | Display | |
| Data in CIF | 6zfh_validation.cif.gz | 146.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zf/6zfh ftp://data.pdbj.org/pub/pdb/validation_reports/zf/6zfh | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6q3xC ![]() 6zgvC ![]() 6zgwC ![]() 6zgxC ![]() 6zgyC ![]() 6zgzC ![]() 6zh0C ![]() 1wuuS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Homo sapiens (human)
X-RAY DIFFRACTION
United Kingdom, 1items
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