- PDB-6y8l: Mycobacterium thermoresistibile GyrB21 in complex with novobiocin -
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基本情報
登録情報
データベース: PDB / ID: 6y8l
タイトル
Mycobacterium thermoresistibile GyrB21 in complex with novobiocin
要素
DNA gyrase subunit B
キーワード
DNA BINDING PROTEIN / Binding Sites / DNA Gyrase / inhibitors / novobiocin / topoisomerase IV / ISOMERASE
機能・相同性
機能・相同性情報
DNA negative supercoiling activity / DNA topoisomerase (ATP-hydrolysing) / DNA topological change / DNA-templated DNA replication / chromosome / DNA binding / ATP binding / metal ion binding / cytoplasm 類似検索 - 分子機能
DNA gyrase subunit B, TOPRIM domain / DNA gyrase, subunit B / DNA topoisomerase, type IIA, subunit B / DNA gyrase B subunit, C-terminal / DNA gyrase B subunit, carboxyl terminus / DNA topoisomerase, type IIA, subunit B, domain 2 / DNA gyrase B / DNA topoisomerase, type IIA / DNA topoisomerase, type IIA, conserved site / DNA topoisomerase II signature. ...DNA gyrase subunit B, TOPRIM domain / DNA gyrase, subunit B / DNA topoisomerase, type IIA, subunit B / DNA gyrase B subunit, C-terminal / DNA gyrase B subunit, carboxyl terminus / DNA topoisomerase, type IIA, subunit B, domain 2 / DNA gyrase B / DNA topoisomerase, type IIA / DNA topoisomerase, type IIA, conserved site / DNA topoisomerase II signature. / TopoisomeraseII / DNA topoisomerase, type IIA, subunit B, C-terminal / Toprim domain / DNA topoisomerase, type IIA-like domain superfamily / Toprim domain profile. / TOPRIM domain / Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase / Histidine kinase-like ATPases / Histidine kinase/HSP90-like ATPase / Histidine kinase/HSP90-like ATPase superfamily / Ribosomal protein S5 domain 2-type fold, subgroup / Ribosomal protein S5 domain 2-type fold 類似検索 - ドメイン・相同性
NOVOBIOCIN / DNA gyrase subunit B / DNA gyrase subunit B 類似検索 - 構成要素
温度: 293 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 5.6 詳細: Crystals grown with 17 mg/ml protein in the presence of 1 mM novobiocin against 100 mM zinc chloride, 100 mM ammonium acetate, 3.5-5% (w/v) PEG6000, 3.5-5% (w/v) PEG8000, 3.5-5% (w/v) PEG1000 ...詳細: Crystals grown with 17 mg/ml protein in the presence of 1 mM novobiocin against 100 mM zinc chloride, 100 mM ammonium acetate, 3.5-5% (w/v) PEG6000, 3.5-5% (w/v) PEG8000, 3.5-5% (w/v) PEG1000 and 100 mM Bis-Tris pH 7.0-7.3
解像度: 1.4→81.86 Å / Cor.coef. Fo:Fc: 0.979 / Cor.coef. Fo:Fc free: 0.964 / SU B: 2.627 / SU ML: 0.045 / SU R Cruickshank DPI: 0.0586 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.059 / ESU R Free: 0.057 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY