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Open data
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Basic information
Entry | Database: PDB / ID: 6xvr | ||||||
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Title | Human myelin protein P2 mutant L35S | ||||||
![]() | Myelin P2 protein | ||||||
![]() | LIPID BINDING PROTEIN / mutant / peripheral membrane protein / FABP / beta barrel | ||||||
Function / homology | ![]() membrane organization / cholesterol binding / fatty acid transport / fatty acid binding / myelin sheath / extracellular exosome / nucleus / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ruskamo, S. / Lehtimaki, M. / Kursula, P. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice. Authors: Ruskamo, S. / Krokengen, O.C. / Kowal, J. / Nieminen, T. / Lehtimaki, M. / Raasakka, A. / Dandey, V.P. / Vattulainen, I. / Stahlberg, H. / Kursula, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 73.6 KB | Display | ![]() |
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PDB format | ![]() | 53.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 664.4 KB | Display | ![]() |
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Full document | ![]() | 664.4 KB | Display | |
Data in XML | ![]() | 9.6 KB | Display | |
Data in CIF | ![]() | 13.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6stsC ![]() 6xu5C ![]() 6xu9C ![]() 6xuaC ![]() 6xuwC ![]() 6xvqC ![]() 6xvsC ![]() 6xvyC ![]() 6xw9C ![]() 2wutS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14965.390 Da / Num. of mol.: 1 / Mutation: L35S Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
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#2: Chemical | ChemComp-PLM / | ||||
#3: Chemical | #4: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.67 Å3/Da / Density % sol: 66.46 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, sitting drop / pH: 7 / Details: 3.6 M ammonium sulphate, 0.1 M HEPES pH 7.0 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX-225 / Detector: CCD / Date: Apr 19, 2011 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2→20 Å / Num. obs: 15619 / % possible obs: 99.8 % / Redundancy: 12.3 % / Biso Wilson estimate: 41 Å2 / CC1/2: 0.999 / Rrim(I) all: 0.104 / Rsym value: 0.1 / Net I/σ(I): 19.8 |
Reflection shell | Resolution: 2→2.05 Å / Mean I/σ(I) obs: 1.7 / Num. unique obs: 1119 / CC1/2: 0.848 / Rrim(I) all: 1.574 / Rsym value: 1.492 / % possible all: 98.2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2wut Resolution: 2→20 Å / Cross valid method: FREE R-VALUE
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Displacement parameters | Biso mean: 23.26 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→20 Å
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Refine LS restraints |
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