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Yorodumi- PDB-6wc5: Crystal Structure of a Ternary MEF2B/NKX2-5/myocardin enhancer DN... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6wc5 | ||||||
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Title | Crystal Structure of a Ternary MEF2B/NKX2-5/myocardin enhancer DNA Complex | ||||||
Components |
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Keywords | TRANSCRIPTION / transcription complex / Cardiogenesis / Carcinogenesis / MADS-box and Homeobox | ||||||
Function / homology | Function and homology information Nkx-2.5 complex / Purkinje myocyte differentiation / right ventricular cardiac muscle tissue morphogenesis / septum secundum development / proepicardium development / pulmonary myocardium development / cardiac ventricle formation / apoptotic process involved in heart morphogenesis / atrioventricular node cell fate commitment / bundle of His development ...Nkx-2.5 complex / Purkinje myocyte differentiation / right ventricular cardiac muscle tissue morphogenesis / septum secundum development / proepicardium development / pulmonary myocardium development / cardiac ventricle formation / apoptotic process involved in heart morphogenesis / atrioventricular node cell fate commitment / bundle of His development / atrial cardiac muscle cell development / ventricular cardiac myofibril assembly / atrioventricular node cell development / embryonic heart tube left/right pattern formation / positive regulation of cardioblast differentiation / atrial cardiac muscle tissue development / positive regulation of heart contraction / atrioventricular node development / ventricular cardiac muscle cell development / regulation of cardiac muscle cell proliferation / atrial septum morphogenesis / Physiological factors / negative regulation of myotube differentiation / cardiac conduction system development / YAP1- and WWTR1 (TAZ)-stimulated gene expression / pharyngeal system development / positive regulation of sodium ion transport / negative regulation of epithelial cell apoptotic process / outflow tract septum morphogenesis / cardiac muscle tissue morphogenesis / ventricular trabecula myocardium morphogenesis / heart trabecula formation / adult heart development / embryonic heart tube development / aortic valve morphogenesis / cardiac muscle cell development / Cardiogenesis / muscle organ development / cardiac muscle cell proliferation / epithelial cell apoptotic process / negative regulation of cardiac muscle cell apoptotic process / DNA-binding transcription activator activity / ventricular septum morphogenesis / Myogenesis / heart looping / cardiac septum morphogenesis / thyroid gland development / hemopoiesis / regulation of cardiac muscle contraction / regulation of cardiac conduction / positive regulation of transcription initiation by RNA polymerase II / vasculogenesis / heart morphogenesis / cardiac muscle contraction / spleen development / epithelial cell differentiation / positive regulation of neuron differentiation / epithelial cell proliferation / positive regulation of epithelial cell proliferation / protein-DNA complex / negative regulation of canonical Wnt signaling pathway / histone deacetylase binding / RNA polymerase II transcription regulator complex / sequence-specific double-stranded DNA binding / cell junction / heart development / DNA-binding transcription activator activity, RNA polymerase II-specific / RNA polymerase II-specific DNA-binding transcription factor binding / transcription regulator complex / sequence-specific DNA binding / transcription by RNA polymerase II / cell differentiation / protein dimerization activity / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of DNA-templated transcription / chromatin binding / positive regulation of cell population proliferation / positive regulation of gene expression / regulation of DNA-templated transcription / chromatin / regulation of transcription by RNA polymerase II / negative regulation of apoptotic process / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / protein homodimerization activity / positive regulation of transcription by RNA polymerase II / protein-containing complex / DNA binding / nucleoplasm / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) synthetic construct (others) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å | ||||||
Authors | Chen, L. / Lei, X. | ||||||
Funding support | United States, 1items
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Citation | Journal: J.Mol.Biol. / Year: 2020 Title: Crystal Structures of Ternary Complexes of MEF2 and NKX2-5 Bound to DNA Reveal a Disease Related Protein-Protein Interaction Interface. Authors: Lei, X. / Zhao, J. / Sagendorf, J.M. / Rajashekar, N. / Xu, J. / Dantas Machado, A.C. / Sen, C. / Rohs, R. / Feng, P. / Chen, L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6wc5.cif.gz | 305.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6wc5.ent.gz | 243.8 KB | Display | PDB format |
PDBx/mmJSON format | 6wc5.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6wc5_validation.pdf.gz | 477.7 KB | Display | wwPDB validaton report |
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Full document | 6wc5_full_validation.pdf.gz | 487.7 KB | Display | |
Data in XML | 6wc5_validation.xml.gz | 19.7 KB | Display | |
Data in CIF | 6wc5_validation.cif.gz | 27.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wc/6wc5 ftp://data.pdbj.org/pub/pdb/validation_reports/wc/6wc5 | HTTPS FTP |
-Related structure data
Related structure data | 6wc2C 1n6jS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Refine code: _
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