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Yorodumi- PDB-6wc2: Crystal Structure of a Ternary MEF2 Chimera/NKX2-5/myocardin enha... -
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Basic information
| Entry | Database: PDB / ID: 6wc2 | ||||||
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| Title | Crystal Structure of a Ternary MEF2 Chimera/NKX2-5/myocardin enhancer DNA Complex | ||||||
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Keywords | TRANSCRIPTION / Transcription Factor / DNA binding Protein / Cardiogenesis / Carcinogenesis | ||||||
| Function / homology | Function and homology informationPurkinje myocyte differentiation / right ventricular cardiac muscle tissue morphogenesis / apoptotic process involved in heart morphogenesis / septum secundum development / proepicardium development / pulmonary myocardium development / Nkx-2.5 complex / cardiac ventricle formation / ventricular cardiac myofibril assembly / atrioventricular node cell fate commitment ...Purkinje myocyte differentiation / right ventricular cardiac muscle tissue morphogenesis / apoptotic process involved in heart morphogenesis / septum secundum development / proepicardium development / pulmonary myocardium development / Nkx-2.5 complex / cardiac ventricle formation / ventricular cardiac myofibril assembly / atrioventricular node cell fate commitment / bundle of His development / atrial cardiac muscle cell development / atrioventricular node cell development / embryonic heart tube left/right pattern formation / positive regulation of cardioblast differentiation / ventricular cardiac muscle cell development / atrial septum morphogenesis / atrial cardiac muscle tissue development / atrioventricular node development / regulation of cardiac muscle cell proliferation / positive regulation of heart contraction / negative regulation of myotube differentiation / pharyngeal system development / negative regulation of epithelial cell apoptotic process / Physiological factors / cardiac conduction system development / epithelial cell apoptotic process / embryonic heart tube development / positive regulation of sodium ion transport / YAP1- and WWTR1 (TAZ)-stimulated gene expression / cardiac muscle tissue morphogenesis / heart trabecula formation / adult heart development / ventricular trabecula myocardium morphogenesis / dendrite morphogenesis / muscle cell development / outflow tract septum morphogenesis / cardiac muscle cell development / aortic valve morphogenesis / Cardiogenesis / thyroid gland development / ventricular septum morphogenesis / muscle organ development / Myogenesis / cardiac septum morphogenesis / DNA-binding transcription activator activity / heart looping / positive regulation of cardiac muscle hypertrophy / histone acetyltransferase binding / ERK/MAPK targets / hemopoiesis / SMAD binding / spleen development / negative regulation of cardiac muscle cell apoptotic process / cardiac muscle cell proliferation / vasculogenesis / heart morphogenesis / regulation of cardiac conduction / positive regulation of transcription initiation by RNA polymerase II / epithelial cell proliferation / regulation of cardiac muscle contraction / cardiac muscle contraction / positive regulation of neuron differentiation / epithelial cell differentiation / positive regulation of epithelial cell proliferation / cellular response to calcium ion / RNA polymerase II transcription regulatory region sequence-specific DNA binding / negative regulation of canonical Wnt signaling pathway / protein-DNA complex / RNA polymerase II transcription regulator complex / histone deacetylase binding / sequence-specific double-stranded DNA binding / heart development / transcription by RNA polymerase II / transcription regulator complex / DNA-binding transcription activator activity, RNA polymerase II-specific / DNA-binding transcription factor binding / sequence-specific DNA binding / RNA polymerase II-specific DNA-binding transcription factor binding / DNA-binding transcription factor activity, RNA polymerase II-specific / cell differentiation / protein dimerization activity / transcription cis-regulatory region binding / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / protein heterodimerization activity / negative regulation of DNA-templated transcription / positive regulation of gene expression / chromatin binding / positive regulation of cell population proliferation / apoptotic process / regulation of transcription by RNA polymerase II / regulation of DNA-templated transcription / negative regulation of apoptotic process / protein kinase binding / positive regulation of DNA-templated transcription / chromatin / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / protein homodimerization activity Similarity search - Function | ||||||
| Biological species | Homo sapiens (human)synthetic construct (others) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | ||||||
Authors | Lei, X. / Chen, L. | ||||||
| Funding support | United States, 1items
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Citation | Journal: J.Mol.Biol. / Year: 2020Title: Crystal Structures of Ternary Complexes of MEF2 and NKX2-5 Bound to DNA Reveal a Disease Related Protein-Protein Interaction Interface. Authors: Lei, X. / Zhao, J. / Sagendorf, J.M. / Rajashekar, N. / Xu, J. / Dantas Machado, A.C. / Sen, C. / Rohs, R. / Feng, P. / Chen, L. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6wc2.cif.gz | 454.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6wc2.ent.gz | 367.3 KB | Display | PDB format |
| PDBx/mmJSON format | 6wc2.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wc/6wc2 ftp://data.pdbj.org/pub/pdb/validation_reports/wc/6wc2 | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 6wc5C ![]() 6byyS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Refine code: _
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
United States, 1items
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