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- PDB-6vjq: Solution NMR structure of Prochlorosin 2.1 produced by Prochloroc... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6vjq | |||||||||
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Title | Solution NMR structure of Prochlorosin 2.1 produced by Prochlorococcus MIT 9313 | |||||||||
![]() | Prochlorosin 2.1 | |||||||||
![]() | UNKNOWN FUNCTION / lanthipeptide / cyclic peptide / posttranslational modification / RiPP | |||||||||
Function / homology | Nif11 domain / Nif11-like leader peptide / Nif11 domain / transferase activity / Possible Formyl transferase![]() | |||||||||
Biological species | ![]() | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
![]() | Bobeica, S.C. / van der Donk, W.A. / Zhu, L. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways. Authors: Bobeica, S.C. / Zhu, L. / Acedo, J.Z. / Tang, W. / van der Donk, W.A. #1: Journal: Chem Sci / Year: 2020 Title: Correction: Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways. Authors: Bobeica, S.C. / Zhu, L. / Acedo, J.Z. / Tang, W. / van der Donk, W.A. #2: Journal: Proc.Natl.Acad.Sci.USA / Year: 2010 Title: Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria. Authors: Li, B. / Sher, D. / Kelly, L. / Shi, Y. / Huang, K. / Knerr, P.J. / Joewono, I. / Rusch, D. / Chisholm, S.W. / van der Donk, W.A. #3: Journal: Nat.Chem.Biol. / Year: 2013 Title: The sequence of the enterococcal cytolysin imparts unusual lanthionine stereochemistry. Authors: Tang, W. / van der Donk, W.A. #4: Journal: Proc.Natl.Acad.Sci.USA / Year: 2017 Title: Evolutionary radiation of lanthipeptides in marine cyanobacteria. Authors: Cubillos-Ruiz, A. / Berta-Thompson, J.W. / Becker, J.W. / van der Donk, W.A. / Chisholm, S.W. #5: Journal: Biochemistry / Year: 2012 Title: Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria. Authors: Tang, W. / van der Donk, W.A. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 133.9 KB | Display | ![]() |
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PDB format | ![]() | 93.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 441.8 KB | Display | ![]() |
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Full document | ![]() | 591.7 KB | Display | |
Data in XML | ![]() | 28 KB | Display | |
Data in CIF | ![]() | 36.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6ve9C ![]() 6vgtC ![]() 6vhjC ![]() 6vljC ![]() 7ju9C ![]() 7jvfC C: citing same article ( |
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2762.152 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() |
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Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0 Not defined / Ionic strength err: _ / pH: 6 / PH err: 0.1 / Pressure: 1 atm / Pressure err: _ / Temperature: 296 K / Temperature err: 0.1
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-NMR measurement
NMR spectrometer | Type: Agilent VNMRS / Manufacturer: Agilent / Model: VNMRS / Field strength: 750 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 3 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |