[English] 日本語
![](img/lk-miru.gif)
- PDB-6tr2: Pre-folded structures govern folding pathways of human telomeric ... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 6tr2 | ||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Pre-folded structures govern folding pathways of human telomeric G-quadruplexes | ||||||||||||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / human telomere / G-quadruplex | Function / homology | DNA / DNA (> 10) | ![]() Biological species | ![]() Method | SOLUTION NMR / simulated annealing | ![]() Wang, B. / Frelih, T. / Plavec, J. / Sket, P. | Funding support | | ![]()
![]() ![]() Title: Pre-folded structures govern folding pathways of human telomeric G-quadruplexes. Authors: Frelih, T. / Wang, B. / Plavec, J. / Sket, P. History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 151.2 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 120.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 318.8 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 369.7 KB | Display | |
Data in XML | ![]() | 7.3 KB | Display | |
Data in CIF | ![]() | 11.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
---|---|
Other databases |
|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: DNA chain | Mass: 7287.690 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-
Sample preparation
Details |
| ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample |
| ||||||||||||||||||
Sample conditions | Ionic strength: 0 mM / Label: conditions_1 / pH: 5 / Pressure: 1 atm / Temperature: 278 K |
-NMR measurement
NMR spectrometer | Type: Agilent Agilent Agilent Technologies DD2 600 MHz NMR spectrometer Manufacturer: Agilent Model: Agilent Agilent Technologies DD2 600 MHz NMR spectrometer Field strength: 600 MHz |
---|
-
Processing
NMR software |
| |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing / Software ordinal: 2 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 10 |