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- PDB-6tl0: Solution structure and 1H, 13C and 15N chemical shift assignments... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6tl0 | |||||||||||||||
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Title | Solution structure and 1H, 13C and 15N chemical shift assignments for the complex of VPS29 with VARP 687-747 | |||||||||||||||
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![]() | INTRACELLULAR VESICLE TRAFFICKING / VARP / retromer / NMR complex structure / Zinc finger / endosome | |||||||||||||||
Function / homology | ![]() WNT ligand biogenesis and trafficking / negative regulation of SNARE complex assembly / tubular endosome / endosome to melanosome transport / retromer, cargo-selective complex / Golgi to vacuole transport / retromer complex / early endosome to late endosome transport / RAB GEFs exchange GTP for GDP on RABs / endocytic recycling ...WNT ligand biogenesis and trafficking / negative regulation of SNARE complex assembly / tubular endosome / endosome to melanosome transport / retromer, cargo-selective complex / Golgi to vacuole transport / retromer complex / early endosome to late endosome transport / RAB GEFs exchange GTP for GDP on RABs / endocytic recycling / retrograde transport, endosome to Golgi / positive regulation of dendrite morphogenesis / transport vesicle / GTPase activator activity / guanyl-nucleotide exchange factor activity / neuron projection morphogenesis / SNARE binding / intracellular protein transport / cytoplasmic vesicle membrane / small GTPase binding / positive regulation of neuron projection development / melanosome / protein transport / late endosome / lysosome / early endosome / endosome membrane / endosome / neuron projection / intracellular membrane-bounded organelle / membrane / metal ion binding / plasma membrane / cytosol Similarity search - Function | |||||||||||||||
Biological species | ![]() ![]() ![]() | |||||||||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||||||||
![]() | Owen, D.J. / Neuhaus, D. / Yang, J.-C. / Crawley-Snowdon, H. | |||||||||||||||
Funding support | ![]() ![]()
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![]() | ![]() Title: Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29. Authors: Crawley-Snowdon, H. / Yang, J.C. / Zaccai, N.R. / Davis, L.J. / Wartosch, L. / Herman, E.K. / Bright, N.A. / Swarbrick, J.S. / Collins, B.M. / Jackson, L.P. / Seaman, M.N.J. / Luzio, J.P. / ...Authors: Crawley-Snowdon, H. / Yang, J.C. / Zaccai, N.R. / Davis, L.J. / Wartosch, L. / Herman, E.K. / Bright, N.A. / Swarbrick, J.S. / Collins, B.M. / Jackson, L.P. / Seaman, M.N.J. / Luzio, J.P. / Dacks, J.B. / Neuhaus, D. / Owen, D.J. | |||||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 1.8 MB | Display | ![]() |
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PDB format | ![]() | 1.5 MB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422.4 KB | Display | ![]() |
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Full document | ![]() | 645 KB | Display | |
Data in XML | ![]() | 140.4 KB | Display | |
Data in CIF | ![]() | 170.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 21626.832 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Protein | Mass: 6319.927 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
#3: Chemical | ChemComp-ZN / |
Has ligand of interest | N |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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