[English] 日本語
![](img/lk-miru.gif)
- PDB-6o0c: NMR ensemble of computationally designed protein XAA_GVDQ mutant M4L -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 6o0c | ||||||
---|---|---|---|---|---|---|---|
Title | NMR ensemble of computationally designed protein XAA_GVDQ mutant M4L | ||||||
![]() | Design construct XAA_GVDQ mutant M4L | ||||||
![]() | DE NOVO PROTEIN | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Wei, K.Y. / Moschidi, D. / Nerli, S. / Sgourakis, N. / Baker, D. | ||||||
Funding support | ![]()
| ||||||
![]() | ![]() Title: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Authors: Wei, K.Y. / Moschidi, D. / Bick, M.J. / Nerli, S. / McShan, A.C. / Carter, L.P. / Huang, P.S. / Fletcher, D.A. / Sgourakis, N.G. / Boyken, S.E. / Baker, D. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 905.9 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 768.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 414.7 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 503.3 KB | Display | |
Data in XML | ![]() | 36.6 KB | Display | |
Data in CIF | ![]() | 56.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6nx2C ![]() 6nxmC ![]() 6ny8C ![]() 6nyeC ![]() 6nyiC ![]() 6nykC ![]() 6nz1C ![]() 6nz3C ![]() 6o0iC C: citing same article ( |
---|---|
Similar structure data | |
Other databases |
|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: Protein | Mass: 10973.532 Da / Num. of mol.: 3 / Mutation: M4L Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Plasmid: pET28b / Production host: ![]() ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-
Sample preparation
Details |
| ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample |
| ||||||||||||||||||
Sample conditions | Ionic strength: 100mM NaCl mM / Label: conditions_k170_MAI(LV)proS / pH: 6.2 / Pressure: 1 atm / Temperature: 310.15 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 800 MHz / Details: TCI cryoprobe |
---|
-
Processing
NMR software |
| ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: back calculated data agree with experimental NOESY spectrum Conformers calculated total number: 5000 / Conformers submitted total number: 10 |