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Yorodumi- PDB-6noa: Solution Structure of the RNA element that recruits eIF3 to the 5... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6noa | ||||||
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Title | Solution Structure of the RNA element that recruits eIF3 to the 5'-UTR of c-Jun and regulates specialized translation initiation (apical loop) | ||||||
Components | C-JUN SL1 | ||||||
Keywords | RNA / c-JUN / mRNA / eIF3 / cap-dependent / specialized translation initiation | ||||||
Function / homology | : / RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Walker, M. / Shortridge, M. / Varani, G. | ||||||
Funding support | United States, 1items
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Citation | Journal: J.Mol.Biol. / Year: 2020 Title: Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun. Authors: Walker, M.J. / Shortridge, M.D. / Albin, D.D. / Cominsky, L.Y. / Varani, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6noa.cif.gz | 336.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6noa.ent.gz | 285.1 KB | Display | PDB format |
PDBx/mmJSON format | 6noa.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/no/6noa ftp://data.pdbj.org/pub/pdb/validation_reports/no/6noa | HTTPS FTP |
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-Related structure data
Related structure data | 6mxqC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 17634.342 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: RNA (56-MER) / Source: (synth.) Homo sapiens (human) / References: GenBank: 186624 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 10 |