- PDB-6mw7: Crystal structure of ATPase module of SMCHD1 bound to ATP -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 6mw7
Title
Crystal structure of ATPase module of SMCHD1 bound to ATP
Components
Structural maintenance of chromosomes flexible hinge domain-containing protein 1
Keywords
HYDROLASE / GHKL-ATPase / epigenetic repressor / Bosma arhinia microphthalmia / fascioscapulohumeral muscular dystrophy type 2
Function / homology
Function and homology information
nose development / Barr body / dosage compensation by inactivation of X chromosome / positive regulation of double-strand break repair via nonhomologous end joining / Hydrolases; Acting on acid anhydrides; In phosphorus-containing anhydrides / chromosome organization / negative regulation of double-strand break repair via homologous recombination / positive regulation of DNA repair / double-strand break repair / site of double-strand break ...nose development / Barr body / dosage compensation by inactivation of X chromosome / positive regulation of double-strand break repair via nonhomologous end joining / Hydrolases; Acting on acid anhydrides; In phosphorus-containing anhydrides / chromosome organization / negative regulation of double-strand break repair via homologous recombination / positive regulation of DNA repair / double-strand break repair / site of double-strand break / protein homodimerization activity / ATP hydrolysis activity / DNA binding / ATP binding Similarity search - Function
Structural maintenance of chromosomes flexible hinge domain-containing protein 1 / SMCHD1, ribosomal S5 domain 2-like domain / SMCs flexible hinge / SMCs flexible hinge superfamily / SMC proteins Flexible Hinge Domain / SMC proteins Flexible Hinge Domain / Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase / Histidine kinase/HSP90-like ATPase superfamily Similarity search - Domain/homology
ADENOSINE-5'-TRIPHOSPHATE / Structural maintenance of chromosomes flexible hinge domain-containing protein 1 Similarity search - Component
Biological species
Homo sapiens (human)
Method
X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.194 Å
A: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 B: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 C: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 D: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 hetero molecules
A: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 B: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 hetero molecules
defined by author&software
Evidence: gel filtration, DSF, cross-linking, also support dimerization
C: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 D: Structural maintenance of chromosomes flexible hinge domain-containing protein 1 hetero molecules
Method to determine structure: SAD / Resolution: 2.194→47.785 Å / SU ML: 0.25 / Cross valid method: THROUGHOUT / σ(F): 1.35 / Phase error: 27.38 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2301
7708
5.04 %
random selection
Rwork
0.1965
-
-
-
obs
0.1982
152943
96.93 %
-
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL