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Open data
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Basic information
Entry | Database: PDB / ID: 6jjx | ||||||
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Title | Crystal Structure of KIBRA and Angiomotin complex | ||||||
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![]() | SIGNALING PROTEIN / WW tandem / PY tandem / KIBRA / Angiomotin / AMOT | ||||||
Function / homology | ![]() establishment of cell polarity involved in ameboidal cell migration / regulation of hippo signaling / Signaling by Hippo / cell migration involved in gastrulation / positive regulation of embryonic development / Regulation of CDH11 function / blood vessel endothelial cell migration / establishment of epithelial cell polarity / negative regulation of organ growth / angiostatin binding ...establishment of cell polarity involved in ameboidal cell migration / regulation of hippo signaling / Signaling by Hippo / cell migration involved in gastrulation / positive regulation of embryonic development / Regulation of CDH11 function / blood vessel endothelial cell migration / establishment of epithelial cell polarity / negative regulation of organ growth / angiostatin binding / hippo signaling / gastrulation with mouth forming second / negative regulation of vascular permeability / Signaling by Hippo / cell-cell junction assembly / regulation of small GTPase mediated signal transduction / negative regulation of hippo signaling / positive regulation of cell size / endocytic vesicle / bicellular tight junction / positive regulation of blood vessel endothelial cell migration / vasculogenesis / stress fiber / regulation of cell migration / positive regulation of stress fiber assembly / ruffle / negative regulation of angiogenesis / actin filament / protein localization / kinase binding / ruffle membrane / chemotaxis / cell migration / lamellipodium / cell junction / protein-macromolecule adaptor activity / signaling receptor activity / cytoplasmic vesicle / actin cytoskeleton organization / angiogenesis / in utero embryonic development / positive regulation of MAPK cascade / molecular adaptor activity / transcription coactivator activity / negative regulation of cell population proliferation / external side of plasma membrane / regulation of DNA-templated transcription / perinuclear region of cytoplasm / cell surface / negative regulation of transcription by RNA polymerase II / protein-containing complex / nucleoplasm / membrane / nucleus / plasma membrane / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lin, Z. / Yang, Z. / Ji, Z. / Zhang, M. | ||||||
![]() | ![]() Title: Decoding WW domain tandem-mediated target recognitions in tissue growth and cell polarity. Authors: Lin, Z. / Yang, Z. / Xie, R. / Ji, Z. / Guan, K. / Zhang, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 135.3 KB | Display | ![]() |
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PDB format | ![]() | 105.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 450.6 KB | Display | ![]() |
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Full document | ![]() | 452.6 KB | Display | |
Data in XML | ![]() | 15.1 KB | Display | |
Data in CIF | ![]() | 21.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6j68SC ![]() 6jjwC ![]() 6jjyC ![]() 6jjzC ![]() 6jk0C ![]() 6jk1C S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 16036.611 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Production host: ![]() ![]() References: UniProt: Q5SXA9 #2: Protein/peptide | Mass: 2788.063 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 50.8 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, hanging drop Details: 25% w/v pentaerythritol propoxylat 629 (17/8 PO/OH), 50mM MgCl2, 100mM Tris (pH 8.5) PH range: 8.5 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Mar 18, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97853 Å / Relative weight: 1 |
Reflection | Resolution: 2→50 Å / Num. obs: 26165 / % possible obs: 99.8 % / Redundancy: 9.9 % / Rmerge(I) obs: 0.103 / Net I/σ(I): 22.4 |
Reflection shell | Resolution: 2→2.03 Å / Redundancy: 10.2 % / Rmerge(I) obs: 0.752 / Mean I/σ(I) obs: 2.2 / Num. unique obs: 1282 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6J68 Resolution: 2→39.687 Å / SU ML: 0.21 / Cross valid method: FREE R-VALUE / σ(F): 1.38 / Phase error: 26.12
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→39.687 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: 65.3741 Å / Origin y: 27.5841 Å / Origin z: 99.9216 Å
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Refinement TLS group | Selection details: all |