- PDB-5mto: N-terminal domain of the human tumor suppressor ING5 C19S mutant -
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Basic information
Entry
Database: PDB / ID: 5mto
Title
N-terminal domain of the human tumor suppressor ING5 C19S mutant
Components
Inhibitor of growth protein 5
Keywords
SIGNALING PROTEIN / ING5 / tumor suppressor
Function / homology
Function and homology information
regulation of DNA biosynthetic process / DNA replication-dependent chromatin disassembly / negative regulation of growth / regulation of developmental process / regulation of hemopoiesis / MOZ/MORF histone acetyltransferase complex / protein acetylation / regulation of DNA replication / histone acetyltransferase complex / negative regulation of fibroblast proliferation ...regulation of DNA biosynthetic process / DNA replication-dependent chromatin disassembly / negative regulation of growth / regulation of developmental process / regulation of hemopoiesis / MOZ/MORF histone acetyltransferase complex / protein acetylation / regulation of DNA replication / histone acetyltransferase complex / negative regulation of fibroblast proliferation / Regulation of TP53 Activity through Acetylation / methylated histone binding / regulation of cell growth / apoptotic signaling pathway / positive regulation of apoptotic signaling pathway / HATs acetylate histones / fibroblast proliferation / regulation of cell cycle / positive regulation of apoptotic process / negative regulation of cell population proliferation / chromatin binding / regulation of DNA-templated transcription / nucleoplasm / nucleus / metal ion binding Similarity search - Function
Helix Hairpins - #1740 / Inhibitor of growth protein, N-terminal histone-binding / Inhibitor of growth proteins N-terminal histone-binding / Inhibitor of growth proteins N-terminal histone-binding / ING family / Helix Hairpins / Zinc finger, PHD-type, conserved site / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Helix non-globular ...Helix Hairpins - #1740 / Inhibitor of growth protein, N-terminal histone-binding / Inhibitor of growth proteins N-terminal histone-binding / Inhibitor of growth proteins N-terminal histone-binding / ING family / Helix Hairpins / Zinc finger, PHD-type, conserved site / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Helix non-globular / Zinc finger, PHD-finger / Zinc finger, PHD-type / PHD zinc finger / Special / Zinc finger, FYVE/PHD-type / Zinc finger, RING/FYVE/PHD-type Similarity search - Domain/homology
Resolution: 3.1→121 Å / Cor.coef. Fo:Fc: 0.924 / Cor.coef. Fo:Fc free: 0.932 / SU B: 17.119 / SU ML: 0.284 / SU R Cruickshank DPI: 0.5466 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.547 / ESU R Free: 0.34 Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2538
512
5 %
RANDOM
Rwork
0.2153
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obs
0.2173
9761
99.99 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å
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