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Open data
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Basic information
Entry | Database: PDB / ID: 6hyx | ||||||
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Title | THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL MUTANT Y197F-P250C | ||||||
![]() | Proton-gated ion channel | ||||||
![]() | MEMBRANE PROTEIN / PENTAMERIC TRANSMEMBRANE CHANNEL / ION CHANNEL. | ||||||
Function / homology | ![]() sodium channel activity / extracellular ligand-gated monoatomic ion channel activity / potassium channel activity / transmembrane transporter complex / regulation of membrane potential / transmembrane signaling receptor activity / neuron projection / signal transduction / identical protein binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Hu, H.D. / Delarue, M. | ||||||
![]() | ![]() Title: Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Authors: Hu, H. / Ataka, K. / Menny, A. / Fourati, Z. / Sauguet, L. / Corringer, P.J. / Koehl, P. / Heberle, J. / Delarue, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 636.2 KB | Display | ![]() |
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PDB format | ![]() | 536.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 642.3 KB | Display | ![]() |
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Full document | ![]() | 656.6 KB | Display | |
Data in XML | ![]() | 52.1 KB | Display | |
Data in CIF | ![]() | 71.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6hy5C ![]() 6hy9C ![]() 6hyaC ![]() 6hyrC ![]() 6hyvC ![]() 6hywC ![]() 6hyzC ![]() 6hz0C ![]() 6hz1C ![]() 6hz3C ![]() 6hzwC ![]() 6i08C C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 36251.684 Da / Num. of mol.: 5 / Fragment: UNP RESIDUES 44-359 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: glvI, glr4197 / Production host: ![]() ![]() #2: Chemical | ChemComp-CL / #3: Chemical | ChemComp-NA / #4: Sugar | ChemComp-LMT / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.99 Å3/Da / Density % sol: 75.36 % |
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Crystal grow | Temperature: 293 K / Method: evaporation / pH: 4 Details: PH 4, VAPOR DIFFUSION, TEMPERATURE 293K.12-14.5% PEG4K; 15% GLycerol; 400 mM NaSCN; 3% DMSO; 100mM NaAcetate pH 4 PH range: 4 |
-Data collection
Diffraction | Mean temperature: 193 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Oct 11, 2015 |
Radiation | Monochromator: CHANNEL CUT / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9785 Å / Relative weight: 1 |
Reflection | Resolution: 3→49.37 Å / Num. obs: 75432 / % possible obs: 99.5 % / Redundancy: 2.8 % / Biso Wilson estimate: 80.96 Å2 / Net I/σ(I): 12.9 |
Reflection shell | Resolution: 3→3.06 Å / Redundancy: 3.5 % / Mean I/σ(I) obs: 3.5 / % possible all: 99 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 70.74 Å2
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Refine analyze | Luzzati coordinate error obs: 0.44 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3→3.08 Å / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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