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Yorodumi- PDB-6huf: Coping with strong translational non-crystallographic symmetry an... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6huf | |||||||||
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Title | Coping with strong translational non-crystallographic symmetry and extreme anisotropy in molecular replacement with Phaser: human Rab27a | |||||||||
Components | Ras-related protein Rab-27A | |||||||||
Keywords | EXOCYTOSIS / GTPase / Vesicle transport | |||||||||
Function / homology | Function and homology information multivesicular body organization / cytotoxic T cell degranulation / positive regulation of constitutive secretory pathway / positive regulation of regulated secretory pathway / melanosome localization / natural killer cell degranulation / exosomal secretion / melanosome transport / Weibel-Palade body / melanocyte differentiation ...multivesicular body organization / cytotoxic T cell degranulation / positive regulation of constitutive secretory pathway / positive regulation of regulated secretory pathway / melanosome localization / natural killer cell degranulation / exosomal secretion / melanosome transport / Weibel-Palade body / melanocyte differentiation / exocytic vesicle / multivesicular body sorting pathway / myosin V binding / RAB geranylgeranylation / melanosome membrane / multivesicular body membrane / RAB GEFs exchange GTP for GDP on RABs / complement-dependent cytotoxicity / positive regulation of reactive oxygen species biosynthetic process / synaptic vesicle transport / Insulin processing / Regulation of MITF-M-dependent genes involved in pigmentation / exocytosis / positive regulation of exocytosis / antigen processing and presentation / protein secretion / photoreceptor outer segment / positive regulation of phagocytosis / small monomeric GTPase / G protein activity / secretory granule / specific granule lumen / GDP binding / blood coagulation / melanosome / late endosome / lysosome / apical plasma membrane / protein domain specific binding / GTPase activity / dendrite / Neutrophil degranulation / GTP binding / positive regulation of gene expression / Golgi apparatus / extracellular exosome / extracellular region / cytosol Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.82 Å | |||||||||
Authors | Jamshidiha, M. / Perez-Dorado, I. / Murray, J.W. / Tate, E.W. / Cota, E. / Read, R.J. | |||||||||
Funding support | United Kingdom, 2items
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Citation | Journal: Acta Crystallogr D Struct Biol / Year: 2019 Title: Coping with strong translational noncrystallographic symmetry and extreme anisotropy in molecular replacement with Phaser: human Rab27a. Authors: Jamshidiha, M. / Perez-Dorado, I. / Murray, J.W. / Tate, E.W. / Cota, E. / Read, R.J. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6huf.cif.gz | 514.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6huf.ent.gz | 397.2 KB | Display | PDB format |
PDBx/mmJSON format | 6huf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6huf_validation.pdf.gz | 4.8 MB | Display | wwPDB validaton report |
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Full document | 6huf_full_validation.pdf.gz | 4.8 MB | Display | |
Data in XML | 6huf_validation.xml.gz | 102.7 KB | Display | |
Data in CIF | 6huf_validation.cif.gz | 124.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hu/6huf ftp://data.pdbj.org/pub/pdb/validation_reports/hu/6huf | HTTPS FTP |
-Related structure data
Related structure data | 3bc1S S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Noncrystallographic symmetry (NCS) | NCS domain:
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