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Yorodumi- PDB-6fqj: GluA2(flop) G724C ligand binding core dimer bound to ZK200775 at ... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 6fqj | ||||||||||||
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| Title | GluA2(flop) G724C ligand binding core dimer bound to ZK200775 at 2.50 Angstrom resolution | ||||||||||||
Components | Glutamate receptor 2,Glutamate receptor 2 | ||||||||||||
Keywords | MEMBRANE PROTEIN / AMPAR receptor / Ligand binding domain / Competitive antagonist / Cross-linked dimer | ||||||||||||
| Function / homology | Function and homology informationspine synapse / dendritic spine neck / dendritic spine head / cellular response to amine stimulus / Activation of AMPA receptors / perisynaptic space / ligand-gated monoatomic cation channel activity / AMPA glutamate receptor activity / Trafficking of GluR2-containing AMPA receptors / response to lithium ion ...spine synapse / dendritic spine neck / dendritic spine head / cellular response to amine stimulus / Activation of AMPA receptors / perisynaptic space / ligand-gated monoatomic cation channel activity / AMPA glutamate receptor activity / Trafficking of GluR2-containing AMPA receptors / response to lithium ion / kainate selective glutamate receptor activity / cellular response to glycine / AMPA glutamate receptor complex / extracellularly glutamate-gated ion channel activity / immunoglobulin binding / asymmetric synapse / ionotropic glutamate receptor complex / conditioned place preference / regulation of receptor recycling / glutamate receptor binding / Unblocking of NMDA receptors, glutamate binding and activation / positive regulation of synaptic transmission / regulation of synaptic transmission, glutamatergic / response to fungicide / glutamate-gated receptor activity / regulation of long-term synaptic depression / cytoskeletal protein binding / extracellular ligand-gated monoatomic ion channel activity / cellular response to brain-derived neurotrophic factor stimulus / glutamate-gated calcium ion channel activity / presynaptic active zone membrane / somatodendritic compartment / ionotropic glutamate receptor binding / dendrite membrane / ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential / dendrite cytoplasm / ionotropic glutamate receptor signaling pathway / synaptic membrane / dendritic shaft / SNARE binding / PDZ domain binding / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / synaptic transmission, glutamatergic / protein tetramerization / establishment of protein localization / postsynaptic density membrane / cerebral cortex development / modulation of chemical synaptic transmission / receptor internalization / Schaffer collateral - CA1 synapse / terminal bouton / synaptic vesicle / synaptic vesicle membrane / signaling receptor activity / presynapse / amyloid-beta binding / growth cone / presynaptic membrane / scaffold protein binding / perikaryon / dendritic spine / chemical synaptic transmission / postsynaptic membrane / neuron projection / postsynaptic density / axon / external side of plasma membrane / neuronal cell body / synapse / dendrite / protein kinase binding / protein-containing complex binding / glutamatergic synapse / cell surface / endoplasmic reticulum / protein-containing complex / identical protein binding / membrane / plasma membrane Similarity search - Function | ||||||||||||
| Biological species | ![]() | ||||||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.50001683981 Å | ||||||||||||
Authors | Coombs, I.D. / Soto, D. / Gold, M.G. / Farrant, M.F. / Cull-Candy, S.G. | ||||||||||||
| Funding support | United Kingdom, 3items
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Citation | Journal: Nat Commun / Year: 2019Title: Homomeric GluA2(R) AMPA receptors can conduct when desensitized. Authors: Coombs, I.D. / Soto, D. / McGee, T.P. / Gold, M.G. / Farrant, M. / Cull-Candy, S.G. | ||||||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6fqj.cif.gz | 1.4 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb6fqj.ent.gz | 1009.7 KB | Display | PDB format |
| PDBx/mmJSON format | 6fqj.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6fqj_validation.pdf.gz | 3 MB | Display | wwPDB validaton report |
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| Full document | 6fqj_full_validation.pdf.gz | 3 MB | Display | |
| Data in XML | 6fqj_validation.xml.gz | 86 KB | Display | |
| Data in CIF | 6fqj_validation.cif.gz | 115.1 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fq/6fqj ftp://data.pdbj.org/pub/pdb/validation_reports/fq/6fqj | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6fqhC ![]() 6fqiC ![]() 6fqkC ![]() 3kgcS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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About Yorodumi




X-RAY DIFFRACTION
United Kingdom, 3items
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