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Yorodumi- PDB-3b7d: Crystal structure of the GLUR2 ligand binding core (HS1S2J) in co... -
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Basic information
| Entry | Database: PDB / ID: 3b7d | ||||||
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| Title | Crystal structure of the GLUR2 ligand binding core (HS1S2J) in complex with CNQX at 2.5 A resolution | ||||||
Components | Glutamate receptor 2 | ||||||
Keywords | MEMBRANE PROTEIN / S1S2 / CNQX / Structural Genomics / PSI-2 / Protein Structure Initiative / Center for Structures of Membrane Proteins / CSMP / Cell junction / Glycoprotein / Ion transport / Ionic channel / Lipoprotein / Palmitate / Phosphorylation / Postsynaptic cell membrane / Receptor / RNA editing / Synapse / Transmembrane / Transport | ||||||
| Function / homology | Function and homology informationspine synapse / dendritic spine neck / dendritic spine head / cellular response to amine stimulus / perisynaptic space / Activation of AMPA receptors / ligand-gated monoatomic cation channel activity / AMPA glutamate receptor activity / response to lithium ion / Trafficking of GluR2-containing AMPA receptors ...spine synapse / dendritic spine neck / dendritic spine head / cellular response to amine stimulus / perisynaptic space / Activation of AMPA receptors / ligand-gated monoatomic cation channel activity / AMPA glutamate receptor activity / response to lithium ion / Trafficking of GluR2-containing AMPA receptors / kainate selective glutamate receptor activity / AMPA glutamate receptor complex / cellular response to glycine / extracellularly glutamate-gated ion channel activity / immunoglobulin binding / asymmetric synapse / ionotropic glutamate receptor complex / conditioned place preference / regulation of receptor recycling / glutamate receptor binding / Unblocking of NMDA receptors, glutamate binding and activation / positive regulation of synaptic transmission / regulation of synaptic transmission, glutamatergic / response to fungicide / cytoskeletal protein binding / glutamate-gated receptor activity / regulation of long-term synaptic depression / extracellular ligand-gated monoatomic ion channel activity / cellular response to brain-derived neurotrophic factor stimulus / presynaptic active zone membrane / glutamate-gated calcium ion channel activity / somatodendritic compartment / dendrite membrane / ionotropic glutamate receptor binding / ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential / ionotropic glutamate receptor signaling pathway / dendrite cytoplasm / synaptic membrane / dendritic shaft / SNARE binding / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / synaptic transmission, glutamatergic / PDZ domain binding / protein tetramerization / establishment of protein localization / postsynaptic density membrane / cerebral cortex development / modulation of chemical synaptic transmission / receptor internalization / Schaffer collateral - CA1 synapse / terminal bouton / synaptic vesicle / synaptic vesicle membrane / presynapse / signaling receptor activity / amyloid-beta binding / presynaptic membrane / growth cone / scaffold protein binding / perikaryon / chemical synaptic transmission / dendritic spine / postsynaptic membrane / neuron projection / postsynaptic density / axon / external side of plasma membrane / neuronal cell body / dendrite / synapse / protein kinase binding / protein-containing complex binding / glutamatergic synapse / cell surface / endoplasmic reticulum / protein-containing complex / identical protein binding / membrane / plasma membrane Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.5 Å | ||||||
Authors | Hays, F.A. / Center for Structures of Membrane Proteins (CSMP) | ||||||
Citation | Journal: Science / Year: 2007Title: TARP auxiliary subunits switch AMPA receptor antagonists into partial agonists. Authors: Menuz, K. / Stroud, R.M. / Nicoll, R.A. / Hays, F.A. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 3b7d.cif.gz | 399.9 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb3b7d.ent.gz | 329.1 KB | Display | PDB format |
| PDBx/mmJSON format | 3b7d.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 3b7d_validation.pdf.gz | 511.5 KB | Display | wwPDB validaton report |
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| Full document | 3b7d_full_validation.pdf.gz | 524.2 KB | Display | |
| Data in XML | 3b7d_validation.xml.gz | 74.4 KB | Display | |
| Data in CIF | 3b7d_validation.cif.gz | 101.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/b7/3b7d ftp://data.pdbj.org/pub/pdb/validation_reports/b7/3b7d | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 1ftjS S: Starting model for refinement |
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| Similar structure data | |
| Other databases |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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