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- PDB-6f4z: 2'F-araG modified quadruplex with flipped G-tract and central tetrad -
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Basic information
Entry | Database: PDB / ID: 6f4z | ||||||||||||||||||||
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Title | 2'F-araG modified quadruplex with flipped G-tract and central tetrad | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / G-QUADRUPLEX / 2'F-ANA | Function / homology | DNA / DNA (> 10) | ![]() Biological species | synthetic construct (others) | Method | SOLUTION NMR / DGSA-distance geometry simulated annealing / molecular dynamics | ![]() Dickerhoff, J. / Weisz, K. | ![]() ![]() Title: Fluorine-Mediated Editing of a G-Quadruplex Folding Pathway. Authors: Dickerhoff, J. / Weisz, K. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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PDBx/mmCIF format | ![]() | 144.4 KB | Display | ![]() |
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PDB format | ![]() | 117.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 326.3 KB | Display | ![]() |
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Full document | ![]() | 371.4 KB | Display | |
Data in XML | ![]() | 7.5 KB | Display | |
Data in CIF | ![]() | 11.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6990.482 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions | Ionic strength: 10 mM / Label: condition_1 / pH: 7 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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Processing
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Refinement |
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NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 10 / Conformers submitted total number: 10 |