- PDB-6ent: Structure of the rat RKIP variant delta143-146 -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 6ent
Title
Structure of the rat RKIP variant delta143-146
Components
Phosphatidylethanolamine-binding protein 1
Keywords
SIGNALING PROTEIN / RKIP / PEBP / PBP
Function / homology
Function and homology information
positive regulation of acetylcholine biosynthetic process / positive regulation of acetylcholine metabolic process / Negative regulation of MAPK pathway / MAP2K and MAPK activation / positive regulation of cAMP-mediated signaling / regulation of the force of heart contraction / receptor serine/threonine kinase binding / mitogen-activated protein kinase binding / sperm capacitation / negative regulation of MAPK cascade ...positive regulation of acetylcholine biosynthetic process / positive regulation of acetylcholine metabolic process / Negative regulation of MAPK pathway / MAP2K and MAPK activation / positive regulation of cAMP-mediated signaling / regulation of the force of heart contraction / receptor serine/threonine kinase binding / mitogen-activated protein kinase binding / sperm capacitation / negative regulation of MAPK cascade / eating behavior / response to corticosterone / spermatid development / response to electrical stimulus / axon terminus / response to cAMP / : / positive regulation of mitotic nuclear division / : / negative regulation of protein phosphorylation / response to activity / hippocampus development / serine-type endopeptidase inhibitor activity / response to organic cyclic compound / response to toxic substance / kinase binding / response to calcium ion / MAPK cascade / synaptic vesicle / apical part of cell / response to ethanol / mitochondrial outer membrane / response to oxidative stress / response to xenobiotic stimulus / signaling receptor binding / neuronal cell body / lipid binding / protein kinase binding / enzyme binding / cell surface / extracellular space / ATP binding Similarity search - Function
Phosphatidylethanolamine-binding, conserved site / Phosphatidylethanolamine-binding protein family signature. / Phosphatidylethanolamine-binding Protein / PEBP-like / Phosphatidylethanolamine-binding protein / Phosphatidylethanolamine-binding protein / Phosphatidylethanolamine-binding protein, eukaryotic / PEBP-like superfamily / Alpha-Beta Complex / Alpha Beta Similarity search - Domain/homology
Resolution: 2.66→20 Å / Cor.coef. Fo:Fc: 0.952 / Cor.coef. Fo:Fc free: 0.933 / SU B: 31.629 / SU ML: 0.293 / Cross valid method: THROUGHOUT / ESU R: 0.849 / ESU R Free: 0.322 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25043
315
4.7 %
RANDOM
Rwork
0.20959
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obs
0.21148
6365
99.66 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å