[English] 日本語
![](img/lk-miru.gif)
- PDB-6air: High resolution structure of perdeuterated high-potential iron-su... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 6air | ||||||
---|---|---|---|---|---|---|---|
Title | High resolution structure of perdeuterated high-potential iron-sulfur protein | ||||||
![]() | High-potential iron-sulfur protein | ||||||
![]() | METAL BINDING PROTEIN / IRON-SULFUR PROTEIN / METAL-BINDING PROTEIN | ||||||
Function / homology | ![]() aerobic electron transport chain / 4 iron, 4 sulfur cluster binding / electron transfer activity / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Hanazono, Y. / Takeda, K. / Miki, K. | ||||||
![]() | ![]() Title: Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography. Authors: Hanazono, Y. / Takeda, K. / Miki, K. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 68.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 49.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 446.4 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 446.4 KB | Display | |
Data in XML | ![]() | 7.1 KB | Display | |
Data in CIF | ![]() | 9.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6aiqC ![]() 3a39S S: Starting model for refinement C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 8793.851 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
---|---|---|---|---|---|
#2: Chemical | ChemComp-SF4 / | ||||
#3: Chemical | ChemComp-SO4 / #4: Chemical | #5: Chemical | ChemComp-DOD / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 1.75 Å3/Da / Density % sol: 29.66 % |
---|---|
Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: 1.6 M d-ammonium sulfate, 0.1 M Na d-citrate pD 4.5 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Jun 13, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.7 Å / Relative weight: 1 |
Reflection | Resolution: 0.85→50 Å / Num. obs: 56756 / % possible obs: 99 % / Redundancy: 6.1 % / Rsym value: 0.096 / Net I/σ(I): 13.4 |
Reflection shell | Resolution: 0.85→0.86 Å / Redundancy: 3.5 % / Mean I/σ(I) obs: 2 / Rsym value: 0.356 / % possible all: 87.9 |
-
Processing
Software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: 3A39 Resolution: 0.85→36.35 Å / Cross valid method: FREE R-VALUE
| ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 0.85→36.35 Å
|