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Open data
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Basic information
Entry | Database: PDB / ID: 3s63 | ||||||
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Title | Saposin-like protein Na-SLP-1 | ||||||
![]() | Saposin-like protein | ||||||
![]() | LIPID BINDING PROTEIN / saposin / lipid-binding | ||||||
Function / homology | Saposin-like / NK-Lysin / Saposin B type domain / Saposin-like / Saposin B type domain profile. / Orthogonal Bundle / Mainly Alpha / Saposin-like protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Willis, C. / Wang, C.K. / Osman, A. / Simon, A. / Mulvenna, J. / Pickering, D. / Riboldi-Tunicliffe, A. / Jones, M.K. / Loukas, A. / Hofmann, A. | ||||||
![]() | ![]() Title: Insights into the membrane interactions of the saposin-like proteins Na-SLP-1 and Ac-SLP-1 from human and dog hookworm. Authors: Willis, C. / Wang, C.K. / Osman, A. / Simon, A. / Pickering, D. / Mulvenna, J. / Riboldi-Tunicliffe, A. / Jones, M.K. / Loukas, A. / Hofmann, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 43.5 KB | Display | ![]() |
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PDB format | ![]() | 34.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.4 KB | Display | ![]() |
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Full document | ![]() | 438.5 KB | Display | |
Data in XML | ![]() | 9 KB | Display | |
Data in CIF | ![]() | 11.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 13565.567 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() #2: Water | ChemComp-HOH / | Sequence details | A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 44.16 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, hanging drop / pH: 7 Details: 0.2M NaCl, 20% PEG 6000, 0.1M HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 289K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: May 7, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.94723 Å / Relative weight: 1 |
Reflection | Resolution: 2.7→25 Å / Num. obs: 7191 / % possible obs: 99.9 % / Redundancy: 41.7 % / Biso Wilson estimate: 56 Å2 / Rsym value: 0.101 / Net I/σ(I): 7.4 |
Reflection shell | Highest resolution: 2.7 Å / Redundancy: 43 % / Num. unique all: 1021 / Rsym value: 0.515 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 53.004 Å2 / ksol: 0.362 e/Å3 | |||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 2.7→24.662 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 4 / % reflection obs: 100 %
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