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- PDB-6aiq: High resolution structure of recombinant high-potential iron-sulf... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6aiq | ||||||
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Title | High resolution structure of recombinant high-potential iron-sulfur protein | ||||||
![]() | High-potential iron-sulfur protein | ||||||
![]() | METAL BINDING PROTEIN / IRON-SULFUR PROTEIN / METAL-BINDING PROTEIN | ||||||
Function / homology | ![]() aerobic electron transport chain / 4 iron, 4 sulfur cluster binding / electron transfer activity / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Hanazono, Y. / Takeda, K. / Miki, K. | ||||||
![]() | ![]() Title: Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography. Authors: Hanazono, Y. / Takeda, K. / Miki, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 72.7 KB | Display | ![]() |
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PDB format | ![]() | 52.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 871 KB | Display | ![]() |
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Full document | ![]() | 871.9 KB | Display | |
Data in XML | ![]() | 7.7 KB | Display | |
Data in CIF | ![]() | 10.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6airC ![]() 3a39S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 8793.851 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
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#2: Chemical | ChemComp-SF4 / | ||||
#3: Chemical | ChemComp-SO4 / #4: Chemical | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.75 Å3/Da / Density % sol: 29.65 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 4.5 / Details: 1.7 M ammonium sulfate, 0.1 M Na citrate pH 4.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Jun 13, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.7 Å / Relative weight: 1 |
Reflection | Resolution: 0.85→50 Å / Num. obs: 56295 / % possible obs: 98.3 % / Redundancy: 6.2 % / Rsym value: 0.082 / Net I/σ(I): 17.2 |
Reflection shell | Resolution: 0.85→0.86 Å / Redundancy: 4.1 % / Mean I/σ(I) obs: 5 / Rsym value: 0.188 / % possible all: 82.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 3A39 Resolution: 0.85→36.32 Å / Cross valid method: FREE R-VALUE
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Refinement step | Cycle: LAST / Resolution: 0.85→36.32 Å
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