Entry Database : PDB / ID : 6a6a Structure visualization Downloads & linksTitle VanYB in complex with D-Alanine ComponentsD-alanyl-D-alanine carboxypeptidase Details Keywords HYDROLASE / Vancomycin resistance / peptidase / metallopeptidase family M15Function / homology Function and homology informationFunction Domain/homology Component
Hydrolases; Acting on peptide bonds (peptidases); Metallocarboxypeptidases / peptidoglycan biosynthetic process / carboxypeptidase activity / cell wall organization / regulation of cell shape / response to antibiotic / proteolysis / metal ion binding / plasma membrane Similarity search - Function Peptidase M15B / D-alanyl-D-alanine carboxypeptidase / Muramoyl-pentapeptide Carboxypeptidase; domain 2 - #10 / Muramoyl-pentapeptide Carboxypeptidase; domain 2 / Hedgehog signalling/DD-peptidase zinc-binding domain superfamily / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homologyBiological species Enterococcus faecalis (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.26 Å DetailsAuthors Kim, H.S. / Hahn, H. Funding support Korea, Republic Of, 4items Details Hide detailsOrganization Grant number Country Ministry of Science, ICT and Future Planning 2013R1A2A1A05067303 Korea, Republic Of Ministry of Science, ICT and Future Planning NRF-2011-0030001 Korea, Republic Of Ministry of Science, ICT and Future Planning NRF-2013M3A6A4043695 Korea, Republic Of Ministry of Science, ICT and Future Planning NRF-2017R1C1B2012225 Korea, Republic Of
CitationJournal : Int. J. Biol. Macromol. / Year : 2018Title : Structural basis for the substrate recognition of peptidoglycan pentapeptides by Enterococcus faecalis VanYB.Authors : Kim, H.S. / Hahn, H. / Kim, J. / Jang, D.M. / Lee, J.Y. / Back, J.M. / Im, H.N. / Kim, H. / Han, B.W. / Suh, S.W. History Deposition Jun 27, 2018 Deposition site : PDBJ / Processing site : PDBJRevision 1.0 Sep 5, 2018 Provider : repository / Type : Initial releaseRevision 1.1 Nov 22, 2023 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_label_asym_id
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