| Entry | Database: PDB / ID: 5zoj |
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| Title | Crystal structure of human SMAD2-MAN1 complex |
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Components | - Inner nuclear membrane protein Man1
- Mothers against decapentaplegic homolog 2
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Keywords | DNA BINDING PROTEIN / Transcription / Complex / TGF-beta signaling |
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| Function / homology | Function and homology information
paraxial mesoderm morphogenesis / zygotic specification of dorsal/ventral axis / activin responsive factor complex / nodal signaling pathway / SMAD4 MH2 Domain Mutants in Cancer / SMAD2/3 MH2 Domain Mutants in Cancer / SMAD protein complex / co-SMAD binding / heteromeric SMAD protein complex / determination of left/right asymmetry in lateral mesoderm ...paraxial mesoderm morphogenesis / zygotic specification of dorsal/ventral axis / activin responsive factor complex / nodal signaling pathway / SMAD4 MH2 Domain Mutants in Cancer / SMAD2/3 MH2 Domain Mutants in Cancer / SMAD protein complex / co-SMAD binding / heteromeric SMAD protein complex / determination of left/right asymmetry in lateral mesoderm / regulation of transforming growth factor beta receptor signaling pathway / Depolymerization of the Nuclear Lamina / FOXO-mediated transcription of cell cycle genes / odontoblast differentiation / trophoblast cell migration / Nuclear Envelope Breakdown / secondary palate development / SMAD2/3 Phosphorylation Motif Mutants in Cancer / TGFBR1 KD Mutants in Cancer / Transcriptional regulation of pluripotent stem cells / anterior/posterior pattern specification / Germ layer formation at gastrulation / primary miRNA processing / SMAD protein signal transduction / pulmonary valve morphogenesis / transforming growth factor beta receptor binding / Formation of definitive endoderm / Signaling by Activin / activin receptor signaling pathway / negative regulation of ossification / type I transforming growth factor beta receptor binding / positive regulation of BMP signaling pathway / Formation of axial mesoderm / ureteric bud development / negative regulation of activin receptor signaling pathway / Signaling by NODAL / endocardial cushion morphogenesis / U1 snRNP binding / mesoderm formation / response to cholesterol / Initiation of Nuclear Envelope (NE) Reformation / RHOD GTPase cycle / I-SMAD binding / aortic valve morphogenesis / RND1 GTPase cycle / nuclear inner membrane / RND2 GTPase cycle / RND3 GTPase cycle / cell fate commitment / SMAD binding / R-SMAD binding / TGF-beta receptor signaling activates SMADs / negative regulation of BMP signaling pathway / negative regulation of cell differentiation / RHOG GTPase cycle / gastrulation / RAC3 GTPase cycle / RAC2 GTPase cycle / transforming growth factor beta receptor signaling pathway / FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes / anatomical structure morphogenesis / positive regulation of epithelial to mesenchymal transition / phosphatase binding / cis-regulatory region sequence-specific DNA binding / RAC1 GTPase cycle / negative regulation of transforming growth factor beta receptor signaling pathway / Downregulation of TGF-beta receptor signaling / Downregulation of SMAD2/3:SMAD4 transcriptional activity / SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription / tau protein binding / disordered domain specific binding / transcription regulator complex / nuclear membrane / double-stranded DNA binding / DNA-binding transcription activator activity, RNA polymerase II-specific / DNA-binding transcription factor binding / RNA polymerase II-specific DNA-binding transcription factor binding / DNA-binding transcription factor activity, RNA polymerase II-specific / cell differentiation / intracellular signal transduction / Ub-specific processing proteases / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of DNA-templated transcription / ubiquitin protein ligase binding / chromatin binding / nucleolus / regulation of DNA-templated transcription / positive regulation of DNA-templated transcription / chromatin / positive regulation of transcription by RNA polymerase II / protein-containing complex / DNA binding / DNA-templated transcription / nucleoplasm / membrane / metal ion binding / identical protein binding / nucleus / cytosolSimilarity search - Function MAN1, RNA recognition motif / : / Man1/Src1, C-terminal / MAN1, winged-helix domain / Man1-Src1p-C-terminal domain / Tumour Suppressor Smad4 - #10 / LEM domain / LEM domain / LEM domain profile. / in nuclear membrane-associated proteins ...MAN1, RNA recognition motif / : / Man1/Src1, C-terminal / MAN1, winged-helix domain / Man1-Src1p-C-terminal domain / Tumour Suppressor Smad4 - #10 / LEM domain / LEM domain / LEM domain profile. / in nuclear membrane-associated proteins / LEM/LEM-like domain superfamily / MAD homology, MH1 / Dwarfin / SMAD MH1 domain superfamily / MAD homology domain 1 (MH1) profile. / SMAD domain, Dwarfin-type / MH2 domain / MAD homology domain 2 (MH2) profile. / Domain B in dwarfin family proteins / MAD homology 1, Dwarfin-type / MH1 domain / Domain A in dwarfin family proteins / SMAD-like domain superfamily / Tumour Suppressor Smad4 / SMAD/FHA domain superfamily / RNA-binding domain superfamily / Nucleotide-binding alpha-beta plait domain superfamily / Sandwich / Mainly BetaSimilarity search - Domain/homology |
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| Biological species | Homo sapiens (human) |
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| Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.794 Å |
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Authors | Miyazono, K. / Ohno, Y. / Ito, T. / Tanokura, M. |
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| Funding support | Japan, 3items | Organization | Grant number | Country |
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| Japan Society for the Promotion of Science | 15K14708 | Japan | | Japan Society for the Promotion of Science | 17K19581 | Japan | | Japan Society for the Promotion of Science | 23228003 | Japan |
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Citation | Journal: Nucleic Acids Res. / Year: 2018 Title: Structural basis for receptor-regulated SMAD recognition by MAN1 Authors: Miyazono, K.I. / Ohno, Y. / Wada, H. / Ito, T. / Fukatsu, Y. / Kurisaki, A. / Asashima, M. / Tanokura, M. |
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| History | | Deposition | Apr 13, 2018 | Deposition site: PDBJ / Processing site: PDBJ |
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| Revision 1.0 | Oct 10, 2018 | Provider: repository / Type: Initial release |
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| Revision 1.1 | Nov 14, 2018 | Group: Data collection / Database references / Structure summary Category: citation / citation_author / entity Item: _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed ..._citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation_author.name / _entity.formula_weight |
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| Revision 1.2 | Dec 26, 2018 | Group: Data collection / Database references / Category: citation Item: _citation.journal_volume / _citation.page_first / _citation.page_last |
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| Revision 1.3 | Mar 27, 2024 | Group: Data collection / Database references / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ncs_dom_lim Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id |
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