- PDB-5yr0: Structure of Beclin1-UVRAG coiled coil domain complex -
+
データを開く
IDまたはキーワード:
読み込み中...
-
基本情報
登録情報
データベース: PDB / ID: 5yr0
タイトル
Structure of Beclin1-UVRAG coiled coil domain complex
要素
Beclin-1
UV radiation resistance associated protein
キーワード
ENDOCYTOSIS / autophagy regulator
機能・相同性
機能・相同性情報
lytic vacuole / maintenance of Golgi location / regulation of protein serine/threonine kinase activity / Macroautophagy / cellular response to aluminum ion / ISG15 antiviral mechanism / phosphatidylinositol 3-kinase complex, class III / phosphatidylinositol 3-kinase complex, class III, type II / positive regulation of stress granule assembly / cellular response to oxygen-glucose deprivation ...lytic vacuole / maintenance of Golgi location / regulation of protein serine/threonine kinase activity / Macroautophagy / cellular response to aluminum ion / ISG15 antiviral mechanism / phosphatidylinositol 3-kinase complex, class III / phosphatidylinositol 3-kinase complex, class III, type II / positive regulation of stress granule assembly / cellular response to oxygen-glucose deprivation / phosphatidylinositol 3-kinase complex, class III, type I / response to mitochondrial depolarisation / positive regulation of attachment of mitotic spindle microtubules to kinetochore / cytoplasmic side of mitochondrial outer membrane / negative regulation of lysosome organization / DNA-dependent protein kinase complex / positive regulation of autophagosome assembly / negative regulation of autophagosome assembly / engulfment of apoptotic cell / receptor catabolic process / protein targeting to lysosome / early endosome to late endosome transport / late endosome to vacuole transport / response to other organism / SMAD protein signal transduction / Ub-specific processing proteases / double-strand break repair via classical nonhomologous end joining / cellular response to nitrogen starvation / retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum / phagophore assembly site / negative regulation of programmed cell death / response to iron(II) ion / centrosome cycle / SNARE complex assembly / phosphatidylinositol-3-phosphate biosynthetic process / spindle organization / mitotic metaphase chromosome alignment / cytoplasmic pattern recognition receptor signaling pathway / lysosome organization / positive regulation of cardiac muscle hypertrophy / p38MAPK cascade / autophagosome membrane / mitophagy / autophagosome maturation / chromosome, centromeric region / autophagosome assembly / negative regulation of reactive oxygen species metabolic process / response to vitamin E / autophagosome / neuron development / regulation of macroautophagy / amyloid-beta metabolic process / cellular response to glucose starvation / positive regulation of autophagy / phosphatidylinositol 3-kinase binding / positive regulation of intrinsic apoptotic signaling pathway / JNK cascade / cellular response to epidermal growth factor stimulus / cellular response to copper ion / phagocytic vesicle / cellular response to amino acid starvation / negative regulation of autophagy / SNARE binding / regulation of cytokinesis / regulation of autophagy / chromosome segregation / macroautophagy / response to lead ion / trans-Golgi network / autophagy / cellular response to hydrogen peroxide / SH3 domain binding / late endosome / GTPase binding / protein-macromolecule adaptor activity / midbody / cytoplasmic vesicle / protein-containing complex assembly / angiogenesis / defense response to virus / early endosome / lysosome / cytoskeleton / response to hypoxia / nuclear body / endosome membrane / endosome / response to xenobiotic stimulus / symbiont entry into host cell / negative regulation of cell population proliferation / cell division / DNA repair / centrosome / ubiquitin protein ligase binding / apoptotic process / dendrite / endoplasmic reticulum membrane / negative regulation of apoptotic process / protein kinase binding / endoplasmic reticulum 類似検索 - 分子機能
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 1.5418 Å / 相対比: 1
反射
解像度: 1.8→50 Å / Num. obs: 8323 / % possible obs: 100 % / 冗長度: 20 % / Rmerge(I) obs: 0.07 / Net I/σ(I): 41.7
反射 シェル
解像度: 1.8→1.86 Å / Rmerge(I) obs: 0.165 / Mean I/σ(I) obs: 22.6
-
解析
ソフトウェア
名称
バージョン
分類
REFMAC
5.8.0222
精密化
MOSFLM
データ削減
SCALA
データスケーリング
SHARP
位相決定
精密化
構造決定の手法: 単一同系置換・異常分散 / 解像度: 1.9→35.18 Å / Cor.coef. Fo:Fc: 0.95 / Cor.coef. Fo:Fc free: 0.954 / SU B: 2.572 / SU ML: 0.078 / 交差検証法: THROUGHOUT / ESU R: 0.166 / ESU R Free: 0.134 / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS