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Open data
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Basic information
Entry | Database: PDB / ID: 5y5c | ||||||
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Title | Crystal structure of dha bind to bovine beta-lactoglobulin | ||||||
![]() | Beta-lactoglobulin | ||||||
![]() | LIPID BINDING PROTEIN / Lactoglobulin Fatty acid Crystal structure | ||||||
Function / homology | ![]() retinol binding / long-chain fatty acid binding / extracellular region / identical protein binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Jiang, L. / Liu, J. | ||||||
![]() | ![]() Title: Crystal structure of dha bind to bovine beta-lactoglobulin Authors: Jiang, L. / Liu, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 76.9 KB | Display | ![]() |
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PDB format | ![]() | 56.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2gj5S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18301.174 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.36 Å3/Da / Density % sol: 47.78 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion / pH: 7.5 / Details: 1.34M trisodium citrate, 0.1M Tris |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Jun 14, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97775 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→50 Å / Num. obs: 11464 / % possible obs: 98.4 % / Redundancy: 9.7 % / Rmerge(I) obs: 0.085 / Net I/σ(I): 24 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2GJ5 Resolution: 2.61→45.46 Å / Cor.coef. Fo:Fc: 0.919 / Cor.coef. Fo:Fc free: 0.89 / SU B: 10.918 / SU ML: 0.234 / Cross valid method: THROUGHOUT / ESU R Free: 0.336 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 45.897 Å2
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Refinement step | Cycle: 1 / Resolution: 2.61→45.46 Å
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Refine LS restraints |
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