+
Open data
-
Basic information
Entry | Database: PDB / ID: 5xrp | ||||||
---|---|---|---|---|---|---|---|
Title | Galectin-10/Charcot-Leyden crystal protein variant Q75A | ||||||
![]() | Galectin-10 | ||||||
![]() | PROTEIN BINDING / Galectin-10/Charcot-Leyden crystal protein | ||||||
Function / homology | ![]() regulation of activated T cell proliferation / regulation of T cell cytokine production / T cell apoptotic process / regulation of T cell anergy / cysteine-type endopeptidase activity involved in apoptotic process / carbohydrate binding / collagen-containing extracellular matrix / identical protein binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Su, J. | ||||||
![]() | ![]() Title: Galectin-10: a new structural type of prototype galectin dimer and effects on saccharide ligand binding. Authors: Su, J. / Gao, J. / Si, Y. / Cui, L. / Song, C. / Wang, Y. / Wu, R. / Tai, G. / Zhou, Y. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 45.2 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 30.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 5xrgC ![]() 5xrhC ![]() 5xriC ![]() 5xrjC ![]() 5xrkC ![]() 5xrlC ![]() 5xrmC ![]() 5xrnC ![]() 5xroC ![]() 5yt4C C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
| ||||||||
Components on special symmetry positions |
|
-
Components
#1: Protein | Mass: 16697.059 Da / Num. of mol.: 1 / Mutation: Q75A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
---|---|
#2: Chemical | ChemComp-GOL / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.77 Å3/Da / Density % sol: 55.6 % |
---|---|
Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / Details: Bis-Tris |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Mar 19, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9 Å / Relative weight: 1 |
Reflection | Resolution: 2→19.6 Å / Num. obs: 13570 / % possible obs: 99.6 % / Redundancy: 8.8 % / Net I/σ(I): 13.7 |
-
Processing
Software |
| ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 2.001→19.599 Å / SU ML: 0.14 / Cross valid method: NONE / σ(F): 1.36 / Phase error: 17.13
| ||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||
Displacement parameters | Biso max: 61.68 Å2 / Biso mean: 19.7296 Å2 / Biso min: 7.8 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.001→19.599 Å
|