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- PDB-5xrm: Galectin-10/Charcot-Leyden crystal protein variant W72A crystal s... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5xrm | ||||||
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Title | Galectin-10/Charcot-Leyden crystal protein variant W72A crystal structure | ||||||
![]() | Galectin-10 | ||||||
![]() | PROTEIN BINDING / Galectin-10/Charcot-Leyden crystal protein | ||||||
Function / homology | ![]() regulation of activated T cell proliferation / regulation of T cell cytokine production / T cell apoptotic process / regulation of T cell anergy / cysteine-type endopeptidase activity involved in apoptotic process / carbohydrate binding / collagen-containing extracellular matrix / identical protein binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Su, J. | ||||||
![]() | ![]() Title: Galectin-10: a new structural type of prototype galectin dimer and effects on saccharide ligand binding. Authors: Su, J. / Gao, J. / Si, Y. / Cui, L. / Song, C. / Wang, Y. / Wu, R. / Tai, G. / Zhou, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 45.3 KB | Display | ![]() |
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PDB format | ![]() | 30.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 439 KB | Display | ![]() |
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Full document | ![]() | 439 KB | Display | |
Data in XML | ![]() | 9.1 KB | Display | |
Data in CIF | ![]() | 12.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5xrgC ![]() 5xrhC ![]() 5xriC ![]() 5xrjC ![]() 5xrkC ![]() 5xrlC ![]() 5xrnC ![]() 5xroC ![]() 5xrpC ![]() 5yt4C C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 16638.977 Da / Num. of mol.: 1 / Mutation: W72A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-GOL / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.76 Å3/Da / Density % sol: 55.45 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / Details: Bis-Tris |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Mar 19, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9 Å / Relative weight: 1 |
Reflection | Resolution: 1.998→19.59 Å / Num. obs: 13511 / % possible obs: 99.3 % / Redundancy: 17.9 % / Net I/σ(I): 34.2 |
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Processing
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Refinement | Resolution: 1.998→19.59 Å / SU ML: 0.14 / Cross valid method: NONE / σ(F): 1.41 / Phase error: 17.86
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||
Displacement parameters | Biso max: 51.95 Å2 / Biso mean: 18.3131 Å2 / Biso min: 7.35 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 1.998→19.59 Å
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