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Open data
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Basic information
Entry | Database: PDB / ID: 5was | ||||||
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Title | Corynebacterium glutamicum Hydrolyzed Homoserine kinase | ||||||
![]() | (Homoserine kinase) x 3 | ||||||
![]() | TRANSFERASE / Corynebacterium glutamicum / Homoserine Kinase / L-threonine / L-homoserine / Magnesium | ||||||
Function / homology | ![]() homoserine kinase / homoserine kinase activity / threonine biosynthetic process / phosphorylation / ATP binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Petit, C. / Ronning, D.R. | ||||||
![]() | ![]() Title: Reduction of Feedback Inhibition in Homoserine Kinase (ThrB) ofCorynebacterium glutamicumEnhances l-Threonine Biosynthesis. Authors: Petit, C. / Kim, Y. / Lee, S.K. / Brown, J. / Larsen, E. / Ronning, D.R. / Suh, J.W. / Kang, C.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 69 KB | Display | ![]() |
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PDB format | ![]() | 48.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 458.2 KB | Display | ![]() |
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Full document | ![]() | 460.6 KB | Display | |
Data in XML | ![]() | 12.7 KB | Display | |
Data in CIF | ![]() | 16.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5watSC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18769.039 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Protein | Mass: 6464.402 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
#3: Protein | Mass: 8281.354 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
#4: Chemical | ChemComp-PO4 / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.19 Å3/Da / Density % sol: 43.75 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: The CglThrB protein concentrated to 16.2 mg/mL in 20 mM Tris pH 7.5, 150 mM NaCl, 50 mM KCl and 50 mM MgCl2 was used for crystallization experiments. Drops were equilibrated against a 100 ...Details: The CglThrB protein concentrated to 16.2 mg/mL in 20 mM Tris pH 7.5, 150 mM NaCl, 50 mM KCl and 50 mM MgCl2 was used for crystallization experiments. Drops were equilibrated against a 100 microLitter of well solution containing 0.25 M ammonium sulfate, 25 % PEG 3,350 and 0.1 M HEPES pH 7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 325 mm CCD / Detector: CCD / Date: Oct 16, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97872 Å / Relative weight: 1 |
Reflection | Resolution: 1.799→50 Å / Num. obs: 27709 / % possible obs: 97.8 % / Redundancy: 23.4 % / Rmerge(I) obs: 0.061 / Net I/σ(I): 43.7 |
Reflection shell | Highest resolution: 1.8 Å / Redundancy: 19.5 % / Rmerge(I) obs: 0.262 / Mean I/σ(I) obs: 6.3 / Num. unique obs: 2537 / % possible all: 92.8 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 5WAT Resolution: 1.799→34.967 Å / SU ML: 0.23 / Cross valid method: NONE / σ(F): 1.34 / Phase error: 34.36
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.799→34.967 Å
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Refine LS restraints |
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LS refinement shell |
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