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- PDB-5w08: A/Texas/50/2012(H3N2) Influenza hemagglutinin in complex with K03... -

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基本情報

登録情報
データベース: PDB / ID: 5w08
タイトルA/Texas/50/2012(H3N2) Influenza hemagglutinin in complex with K03.12 Fab
要素
  • (K03.12 antibody ...) x 2
  • Hemagglutinin HA1
キーワードVIRAL PROTEIN/IMMUNE SYSTEM / Fab influenza neutralizing antibody / VIRAL PROTEIN-IMMUNE SYSTEM complex
機能・相同性
機能・相同性情報


immunoglobulin complex / viral budding from plasma membrane / clathrin-dependent endocytosis of virus by host cell / adaptive immune response / host cell surface receptor binding / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane ...immunoglobulin complex / viral budding from plasma membrane / clathrin-dependent endocytosis of virus by host cell / adaptive immune response / host cell surface receptor binding / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane / virion membrane / extracellular region / membrane / plasma membrane
類似検索 - 分子機能
: / Hemagglutinin; Chain A, domain 2 / Hemagglutinin Chain A, Domain 2 / Hemagglutinin (Ha1 Chain); Chain: A; domain 1 / Haemagglutinin, alpha/beta domain, HA1 chain / : / Haemagglutinin, influenzavirus A / Haemagglutinin, HA1 chain, alpha/beta domain superfamily / Haemagglutinin / Haemagglutinin, influenzavirus A/B ...: / Hemagglutinin; Chain A, domain 2 / Hemagglutinin Chain A, Domain 2 / Hemagglutinin (Ha1 Chain); Chain: A; domain 1 / Haemagglutinin, alpha/beta domain, HA1 chain / : / Haemagglutinin, influenzavirus A / Haemagglutinin, HA1 chain, alpha/beta domain superfamily / Haemagglutinin / Haemagglutinin, influenzavirus A/B / Viral capsid/haemagglutinin protein / Immunoglobulin V-Type / Ribbon / Immunoglobulin V-set domain / Immunoglobulin V-set domain / Immunoglobulin subtype / Immunoglobulin / Immunoglobulin/major histocompatibility complex, conserved site / Immunoglobulins and major histocompatibility complex proteins signature. / Immunoglobulin C-Type / Immunoglobulin C1-set / Immunoglobulin C1-set domain / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold / Immunoglobulins / Alpha-Beta Complex / Immunoglobulin-like / Sandwich / Mainly Beta / Alpha Beta
類似検索 - ドメイン・相同性
IGL@ protein / Hemagglutinin / IgG H chain
類似検索 - 構成要素
生物種Influenza A virus (A型インフルエンザウイルス)
Homo sapiens (ヒト)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.6 Å
データ登録者McCarthy, K.R. / Harrison, S.C.
資金援助 米国, 2件
組織認可番号国
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)P01AI089618 米国
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)1U19AI117892-01 米国
引用ジャーナル: Immunity / 年: 2018
タイトル: Memory B Cells that Cross-React with Group 1 and Group 2 Influenza A Viruses Are Abundant in Adult Human Repertoires.
著者: McCarthy, K.R. / Watanabe, A. / Kuraoka, M. / Do, K.T. / McGee, C.E. / Sempowski, G.D. / Kepler, T.B. / Schmidt, A.G. / Kelsoe, G. / Harrison, S.C.
履歴
登録2017年5月30日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02018年2月14日Provider: repository / タイプ: Initial release
改定 1.12019年12月11日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 2.02020年7月29日Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Structure summary
カテゴリ: atom_site / chem_comp ...atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_unobs_or_zero_occ_atoms / pdbx_validate_close_contact / struct_asym / struct_conn / struct_site / struct_site_gen
Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_unobs_or_zero_occ_atoms.auth_asym_id / _pdbx_unobs_or_zero_occ_atoms.auth_seq_id / _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _pdbx_validate_close_contact.auth_asym_id_1 / _pdbx_validate_close_contact.auth_asym_id_2 / _pdbx_validate_close_contact.auth_seq_id_1 / _pdbx_validate_close_contact.auth_seq_id_2 / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id
解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation
改定 2.12023年10月4日Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession
改定 2.22024年11月13日Group: Structure summary
カテゴリ: pdbx_entry_details / pdbx_modification_feature

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Hemagglutinin HA1
B: Hemagglutinin HA1
C: Hemagglutinin HA1
D: Hemagglutinin HA1
E: Hemagglutinin HA1
F: Hemagglutinin HA1
G: K03.12 antibody heavy chain
H: K03.12 antibody light chain
I: K03.12 antibody heavy chain
J: K03.12 antibody light chain
K: K03.12 antibody heavy chain
L: K03.12 antibody light chain
M: K03.12 antibody heavy chain
N: K03.12 antibody light chain
O: K03.12 antibody heavy chain
P: K03.12 antibody light chain
Q: K03.12 antibody heavy chain
R: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)498,02945
ポリマ－489,34318
非ポリマー8,68627
水13,007722
1
A: Hemagglutinin HA1
G: K03.12 antibody heavy chain
H: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)83,2328
ポリマ－81,5573
非ポリマー1,6755
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
2
B: Hemagglutinin HA1
I: K03.12 antibody heavy chain
J: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)83,3068
ポリマ－81,5573
非ポリマー1,7495
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
3
C: Hemagglutinin HA1
K: K03.12 antibody heavy chain
L: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)82,8077
ポリマ－81,5573
非ポリマー1,2504
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
4
D: Hemagglutinin HA1
Q: K03.12 antibody heavy chain
R: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)83,0708
ポリマ－81,5573
非ポリマー1,5125
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
5
E: Hemagglutinin HA1
O: K03.12 antibody heavy chain
P: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)82,8077
ポリマ－81,5573
非ポリマー1,2504
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
6
F: Hemagglutinin HA1
M: K03.12 antibody heavy chain
N: K03.12 antibody light chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)82,8077
ポリマ－81,5573
非ポリマー1,2504
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)60.800, 325.120, 156.990
Angle α, β, γ (deg.)90.00, 97.63, 90.00
Int Tables number4
Space group name H-MP1211

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要素

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タンパク質 , 1種, 6分子 ABCDEF

#1: タンパク質
Hemagglutinin HA1


分子量: 32618.846 Da / 分子数: 6 / 断片: UNP residues 53-335 / 由来タイプ: 組換発現
由来: (組換発現) Influenza A virus (A/Texas/50/2012(H3N2)) (A型インフルエンザウイルス)
株: A/Texas/50/2012(H3N2) / 遺伝子: HA, L998_47834gpHA / 発現宿主: Trichoplusia ni (イラクサキンウワバ) / 参照: UniProt: R4L1D1

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抗体 , 2種, 12分子 GIKMOQHJLNPR

#2: 抗体
K03.12 antibody heavy chain


分子量: 26533.676 Da / 分子数: 6 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 細胞株 (発現宿主): HEK293T / 発現宿主: Homo sapiens (ヒト) / 参照: UniProt: S6C4S0
#3: 抗体
K03.12 antibody light chain


分子量: 22404.666 Da / 分子数: 6 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 細胞株 (発現宿主): HEK293T / 発現宿主: Homo sapiens (ヒト) / 参照: UniProt: Q6IPQ0

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糖 , 3種, 26分子

#4: 多糖
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


タイプ: oligosaccharide / 分子量: 424.401 Da / 分子数: 5 / 由来タイプ: 組換発現
記述子タイププログラム
DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}LINUCSPDB-CARE
#5: 多糖
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta- ...beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


タイプ: oligosaccharide / 分子量: 586.542 Da / 分子数: 5 / 由来タイプ: 組換発現
記述子タイププログラム
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROHGlycam Condensed SequenceGMML 1.0
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1WURCSPDB2Glycan 1.1.0
[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}LINUCSPDB-CARE
#6: 糖
ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE / N-アセチル-β-D-グルコサミン


タイプ: D-saccharide, beta linking / 分子量: 221.208 Da / 分子数: 16 / 由来タイプ: 組換発現 / 式: C8H15NO6
識別子タイププログラム
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0

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非ポリマー , 2種, 723分子

#7: 化合物 ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / グリセロ-ル


分子量: 92.094 Da / 分子数: 1 / 由来タイプ: 合成 / 式: C3H8O3
#8: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 722 / 由来タイプ: 天然 / 式: H2O

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詳細

Has protein modificationY

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.14 Å3/Da / 溶媒含有率: 60.86 %
結晶化温度: 291.15 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 5.5
詳細: 100 mM sodium citrate/citric acid, pH 5.5, 20% w/v PEG3000

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: ALS / ビームライン: 8.2.2 / 波長: 0.999876 Å
検出器タイプ: ADSC QUANTUM 315r / 検出器: CCD / 日付: 2016年6月23日
放射モノクロメーター: double crystal Si(111) / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.999876 Å / 相対比: 1
反射解像度: 2.6→50 Å / Num. obs: 182963 / % possible obs: 99.17 % / 冗長度: 7.5 % / Biso Wilson estimate: 46.52 Å2 / CC1/2: 0.985 / Rmerge(I) obs: 0.2753 / Rpim(I) all: 0.1077 / Rrim(I) all: 0.2967 / Net I/σ(I): 8.29
反射 シェル解像度: 2.6→2.693 Å / 冗長度: 7.1 % / Rmerge(I) obs: 2.635 / Mean I/σ(I) obs: 1.19 / Num. unique obs: 18367 / CC1/2: 0.367 / Rpim(I) all: 1.036 / Rrim(I) all: 2.84 / % possible all: 99.78

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解析

ソフトウェア
名称バージョン分類
PHENIX(1.12_2829: ???)精密化
XDSデータ削減
XDSデータスケーリング
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: PDB entries 4O5N, 4WUK, 4HKX, 3TNN

4o5n

4wuk

4hkx

3tnn


解像度: 2.6→49.413 Å / SU ML: 0.41 / 交差検証法: FREE R-VALUE / σ(F): 1.34 / 位相誤差: 28.43 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2621 9066 4.96 %
Rwork0.24 --
obs0.241 182849 99.18 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
精密化ステップサイクル: LAST / 解像度: 2.6→49.413 Å
タンパク質核酸リガンド溶媒全体
原子数33095 0 565 722 34382
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.00634576
X-RAY DIFFRACTIONf_angle_d0.86947183
X-RAY DIFFRACTIONf_dihedral_angle_d15.87212616
X-RAY DIFFRACTIONf_chiral_restr0.0735325
X-RAY DIFFRACTIONf_plane_restr0.016019
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
2.6-2.62960.3613410.354582318337100
2.6296-2.66050.37763060.35455812100
2.6605-2.69290.34183230.33845732100
2.6929-2.7270.36153310.32815814100
2.727-2.76290.3442970.3355943100
2.7629-2.80080.34993100.3295742100
2.8008-2.84080.3643260.32195761100
2.8408-2.88320.3333040.32715896100
2.8832-2.92820.33363220.32565769100
2.9282-2.97620.35332990.30875812100
2.9762-3.02750.33463280.30215864100
3.0275-3.08260.32783190.29465743100
3.0826-3.14190.29182810.28875825100
3.1419-3.2060.29383340.28435852100
3.206-3.27570.28033030.27415715100
3.2757-3.35190.28193060.2647582999
3.3519-3.43570.28932930.2579579199
3.4357-3.52850.29183030.2581577699
3.5285-3.63230.26082670.2457584299
3.6323-3.74950.26692850.2385578899
3.7495-3.88350.25573170.229575799
3.8835-4.03890.22733020.2216583499
4.0389-4.22260.20233120.1998569198
4.2226-4.44510.20172720.186574498
4.4451-4.72340.20412600.1796578298
4.7234-5.08780.20423000.1805572598
5.0878-5.59910.21942780.1926575898
5.5991-6.40790.23082850.2125575899
6.4079-8.06760.24892740.2178582999
8.0676-49.42170.1962880.179577697
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
13.18881.16351.23060.45850.50250.56150.3275-0.3244-0.3173-0.0103-0.14090.64840.3601-0.2762-0.02530.6627-0.2025-0.20660.44560.17011.0579-64.414518.778620.4597
23.67163.35280.77363.5267-0.01790.95760.0514-0.0572-0.52090.00390.029-0.16910.3195-0.0496-0.07880.3177-0.05980.0510.27980.00960.5585-45.921633.911320.106
32.905-0.01950.13812.67580.78512.9864-0.0437-0.16540.11310.0574-0.05050.06860.08060.06040.13620.2365-0.07450.02410.22530.03650.3291-36.365744.420220.0048
42.53171.154-0.07281.4367-1.07291.6634-0.14480.2767-0.133-0.30050.12280.0660.11710.0747-0.03570.3635-0.12310.00570.2655-0.03970.3626-40.326244.568312.7026
51.95191.1777-0.27211.1148-0.59180.8158-0.1662-0.039-0.5594-0.54110.36230.1390.6425-0.2606-0.19780.6723-0.2607-0.14110.47940.07830.7044-59.22919.964918.0327
65.7022-0.13092.72130.23850.77644.27490.33870.2513-0.5217-0.95960.23241.14130.548-0.6175-0.39060.6096-0.2103-0.26430.64740.11040.9262-71.439617.075813.4139
76.6057-0.87843.54831.99940.34415.38640.08210.5933-0.191-0.91030.17671.3027-0.163-0.4891-0.29240.8858-0.2266-0.30310.70830.14040.8092-71.43321.00418.8554
88.23992.97211.09046.04391.04954.84770.2609-0.5217-0.9243-0.1604-0.1395-0.26990.2278-0.2493-0.09520.3585-0.11310.03970.2276-0.0090.3958-30.991970.179314.4433
91.54440.8076-0.27580.5248-0.34910.66140.0284-0.1377-0.3533-0.01780.0707-0.21790.0563-0.1011-0.14890.3497-0.04840.03960.2055-0.0310.4795-16.174883.36718.4653
105.06550.56081.40423.01311.24943.71670.06330.6471-0.2932-0.16430.2504-0.22080.53320.0545-0.30240.4088-0.08940.06450.25890.02610.453-9.160685.59999.376
115.48621.17170.14526.75751.69484.5075-0.4814-0.3373-0.32630.0367-0.22830.29210.60730.22130.65890.2694-0.02690.11030.25130.0540.2978-2.976494.519624.5023
122.34510.85730.79226.23372.91053.9585-0.20240.4922-0.2226-0.95530.151-0.4892-0.07970.2216-0.03420.386-0.05910.14710.3074-0.02380.4662.810592.924210.6245
133.28161.50150.74074.60570.54692.6831-0.22620.21590.9374-0.1920.1180.3074-0.2787-0.04350.02970.3443-0.1743-0.01690.20110.00110.3739-4.8755102.264112.8092
141.7009-1.16260.71153.23391.44863.89320.19570.5680.2-1.07620.6673-0.4069-0.95430.4488-0.75080.6699-0.27370.04790.5550.03060.6558-2.500999.07670.9278
153.6193-0.62330.15453.07371.64812.4625-0.47340.39550.3344-0.46450.25540.1445-0.09480.00210.15640.3463-0.15540.04350.26950.08340.3763-8.844397.4049.6167
163.64032.22440.40333.18950.30320.8682-0.04620.3516-0.5544-0.42190.1168-0.3566-0.17530.0308-0.04280.3971-0.09340.02670.2294-0.0320.3766-13.290782.026210.8772
173.24311.57530.67553.1652-0.03821.4640.37120.1908-0.5329-0.52310.02020.20790.3981-0.075-0.17450.5388-0.0623-0.11940.37840.03570.7029-34.864367.36129.8744
180.37820.2856-1.13162.56930.10354.1196-0.09980.9413-0.048-1.39710.11131.0929-0.1286-0.41190.04190.9492-0.1187-0.31650.4268-0.01040.8396-36.856572.75693.5785
198.61272.84023.79333.09030.66964.13330.8217-0.81120.01210.503-0.405-0.17980.4498-0.774-0.46090.5574-0.15180.04690.42530.01680.5526-96.8608-34.630923.8625
204.96232.24930.83414.05560.9982.31310.061-0.2210.28010.35210.00940.65220.3565-0.3747-0.04740.4475-0.1020.00010.2687-0.00140.5133-84.0846-21.181127.9205
216.25251.47060.02571.0906-1.68393.8360.00720.43780.3147-1.02840.27871.2105-0.2478-0.2551-0.23750.5532-0.1333-0.14750.4245-0.00090.7767-85.2479-15.422917.2601
223.68371.41971.23765.49871.98433.1511-0.11890.2995-0.4989-0.30210.0167-0.58110.31880.5058-0.06880.4763-0.09020.0090.3593-0.01450.5802-67.447-16.095923.3816
233.80391.18491.07935.46741.7723.251-0.1944-0.24260.1749-0.00280.0158-0.20030.26610.10170.23960.3138-0.1015-0.00780.3022-0.00940.3088-70.33-7.077731.2976
242.8471.40280.99024.97890.91072.8668-0.62920.85430.5906-0.46860.36740.0365-0.16930.18470.0390.3816-0.30310.05680.43490.04810.5091-70.1372-7.967219.2926
255.78612.0518-1.22535.11432.59337.3496-0.85660.31350.2285-0.65770.04961.3109-0.37010.21230.66220.5272-0.1676-0.1420.48020.14260.768-76.8511-1.643319.0458
263.33241.57931.34355.29810.77561.8377-0.37480.63440.216-0.44830.64840.05310.19670.2682-0.23980.5406-0.2820.01360.47230.01660.452-71.6326-13.002715.9623
270.96570.9188-0.12711.590.25571.72630.2609-0.00090.08450.0960.1504-0.00960.53720.0441-0.2050.7157-0.1991-0.13480.356-0.00560.7753-91.7377-33.06521.5308
280.89430.48660.89470.86731.00681.64730.27830.08680.19410.121-0.31340.25880.5199-0.2305-0.02580.7875-0.2253-0.0570.4771-0.10220.7821-103.7254-36.509616.7343
293.9469-1.92195.33916.1102-0.89077.83350.09410.6-1.09730.02320.4742.0050.1418-0.4937-0.59220.8005-0.1308-0.21680.51470.08531.1026-103.9811-32.26712.3901
300.9439-0.2546-0.23872.25770.24462.2395-0.10710.1393-0.47230.42870.2559-0.49120.01490.3427-0.17840.54460.1571-0.01370.30190.01790.8425-64.57-39.927-11.2658
312.1337-2.10860.50062.7261-0.25290.9144-0.06080.1269-0.02180.05350.094-0.0276-0.051-0.15780.07620.53510.0962-0.02560.2695-0.0330.4616-78.1517-26.8063-16.7517
321.5837-2.0840.25753.1748-0.71891.6013-0.3368-0.0415-0.05730.29730.10190.1644-0.3336-0.26780.0820.59450.1972-0.0480.2687-0.09220.4749-89.4552-17.059-15.1965
331.54640.18740.73755.0387-0.42450.413-0.1109-0.50630.6921.22130.23890.6296-0.4903-0.4108-0.25150.95410.28260.11150.5111-0.02910.5244-93.2249-19.5877-4.1321
342.0318-1.5131-0.03434.0963-0.14070.076-0.2489-0.21760.35450.51610.040.0869-0.2074-0.0652-0.01691.09250.4774-0.21690.36560.07110.7457-89.51690.8646-16.1534
351.1843-0.4689-0.16893.4981-0.36812.4548-0.5538-0.31540.41040.88510.2396-0.5831-0.60360.0820.19880.9370.2859-0.13970.3547-0.04990.6465-83.2375-7.8096-9.7776
360.1898-0.27120.24831.99280.15430.4129-0.3248-0.2010.0080.68440.06910.1221-0.1491-0.2414-0.08280.91780.65190.00970.1666-0.12660.6129-90.1364-17.1896-5.4174
370.86670.6214-0.48092.90370.37134.6571-0.4042-0.2467-0.37960.66890.2787-0.259-0.1023-0.01490.08490.4820.1836-0.0270.3480.00680.5326-70.3799-37.9556-9.3688
380.3295-1.01670.87534.0673-0.93695.9424-0.1706-0.08520.1591.35230.0406-1.6625-0.15740.76680.03810.80880.1958-0.30150.5793-0.08480.7537-58.0513-38.4776-2.8238
395.0945-0.1927-0.48414.3758-1.13790.38950.0498-0.0181-0.2852-0.39620.11160.0660.67160.2487-0.10950.84420.3096-0.17840.528-0.11060.50361.984970.7969-19.7307
402.7628-1.59880.99883.4176-1.91251.0757-0.1474-0.07040.0850.49990.2755-0.51260.17990.2013-0.1890.64830.1972-0.06780.2821-0.11540.5292-9.556587.0724-23.42
412.2087-1.69462.06094.8213-2.60882.2205-0.0155-0.58970.02840.40890.0970.62360.1894-0.1618-0.12720.61620.1520.08720.4251-0.02560.4319-25.931292.6554-21.8746
424.3289-2.54771.69136.5086-1.27132.9332-0.19390.0635-0.25630.3003-0.12870.14990.04380.07350.36720.39270.04420.03850.2002-0.02760.3547-22.695699.7527-31.3697
432.0247-1.35080.194.0126-0.87612.0595-0.6488-0.55220.36681.07150.44670.0037-0.1745-0.23270.00970.75680.4275-0.05140.2696-0.07970.3982-22.0549101.064-19.3809
441.9194-0.231-0.34212.8506-0.65644.0928-0.7244-0.50060.23671.01390.3894-0.6166-0.26930.17060.250.72260.3016-0.18540.4608-0.12690.4912-14.7703106.5903-20.7572
451.7773-1.46990.52492.4104-0.57811.312-0.7732-0.68770.13611.0280.74150.17170.0988-0.3247-0.040.9090.38320.03430.5171-0.00260.4859-20.022797.6178-12.8828
461.6399-1.26040.81361.9136-0.71580.7268-0.1972-0.2163-0.04980.46660.3536-0.14490.1190.228-0.15610.84140.2524-0.20770.4474-0.12810.4715-4.1577.8377-16.5976
471.1745-0.1775-1.63542.6507-0.35942.93-0.1165-0.30830.0101-0.3843-0.0741-0.1776-0.35730.30230.2031.20790.2892-0.3830.7215-0.2550.70129.531374.8744-9.4959
482.489-0.5202-0.81473.20650.74740.5562-0.3687-0.3626-0.11040.54510.4915-0.3992-0.03530.1284-0.14451.33770.3575-0.30060.4856-0.13080.8518-33.000614.3126-13.964
490.2866-0.2368-0.02881.0876-0.08730.01460.0451-0.05580.15160.37760.2004-0.45120.22140.135-0.03631.23450.6894-0.33450.0761-0.24720.5903-45.466330.0205-19.7427
504.0694-0.42050.53751.0761-0.32810.3425-0.3674-0.31-0.5570.47610.1318-0.25840.15290.1488-0.01211.2120.4686-0.24260.3697-0.10250.603-49.62128.9086-10.8335
511.84960.8125-0.33670.5391-0.63491.3484-0.3325-0.1692-0.73090.1262-0.05450.41340.5123-0.04970.43590.77460.1582-0.0330.3658-0.08680.5448-59.84639.9504-25.6003
520.7026-0.7471-0.16412.14880.06570.6263-0.1612-0.29410.04310.4788-0.03260.05270.1844-0.0211-0.21220.92030.6888-0.1712-0.0466-0.24560.3991-58.857245.0375-16.8642
530.17270.15980.21051.2774-0.32441.8857-0.2249-0.07320.35140.63430.0478-0.4022-0.4484-0.21430.14211.15710.2817-0.17560.4642-0.24070.7267-50.62649.5157-14.7127
540.8655-0.79240.18581.48250.20380.1985-0.2007-0.3083-0.28260.49910.291-0.13010.2617-0.01810.19711.27660.6562-0.17530.201-0.1780.4884-56.996439.4823-9.9118
550.11750.167-0.00212.1133-0.29840.3399-0.2433-0.2601-0.16290.70460.0231-0.0766-0.27770.0551-0.07421.75690.7673-0.70760.24570.04390.6905-31.606516.019-8.1983
563.20670.39381.4631.67440.79443.95710.0167-0.41940.16710.12450.03490.14140.12950.1594-0.05810.2333-0.06440.06550.33210.01620.361-24.786458.871645.9193
578.44280.7127-3.35263.4344-0.03675.0970.0569-0.03320.26-0.04140.0127-0.1865-0.1055-0.0808-0.05310.2584-0.0452-0.01930.2864-0.03370.19811.330873.726165.5251
584.87460.104-3.03574.6928-1.69058.20560.1412-0.15760.07940.15190.0308-0.33990.22590.9921-0.02230.17390.0770.00610.4681-0.0070.28610.010356.881833.3264
592.7768-2.2037-0.67242.75180.17183.2879-0.2339-0.0773-1.30790.09880.19320.82122.2827-0.42480.13731.0552-0.15130.15640.99990.21350.5853-12.876643.977932.4124
603.56660.36621.58811.62161.42146.1286-0.07380.09480.3145-0.1266-0.1648-0.241-0.28040.46890.26230.2428-0.01660.03620.39180.08550.4649-8.999761.348129.3924
612.80750.64981.68871.80770.28024.99970.0518-0.44920.3110.3430.0228-0.12860.17460.0869-0.02980.2860.04420.07410.37880.04940.424-8.268256.445938.295
621.65330.15872.1870.83710.74894.18360.05550.2724-0.183-0.01940.2936-0.10960.11460.3379-0.24870.2148-0.02510.0490.4372-0.04950.450412.070262.668956.1327
632.0579-0.1883-0.47844.5865-3.16727.8363-0.24060.1749-0.09130.1220.43040.23910.3809-0.769-0.29110.2335-0.0911-0.00390.4517-0.03690.45378.432859.792957.9391
642.7488-1.21620.37256.1347-3.82373.0338-0.25750.1106-0.05550.2350.1945-0.44330.67170.68870.11660.4029-0.01590.08120.52-0.18340.576317.385854.962856.3783
652.89440.43960.53341.29850.57292.93590.0969-0.569-0.07020.2255-0.02670.08150.06410.2805-0.03280.268-0.09220.13110.4104-0.02720.374710.7512111.547843.2984
662.24760.5550.83021.51060.67682.81470.1044-0.41980.2217-0.1382-0.17170.10990.08070.18510.01110.1962-0.11680.12630.3061-0.06640.40797.7706108.509431.1949
676.22540.9572-2.27452.8530.19192.9114-0.2983-0.4115-0.36520.18030.2908-0.61180.11650.07430.09450.4677-0.05680.2630.4108-0.15510.247348.1376122.496559.7201
686.33330.2881-2.76962.45631.09313.67170.145-0.0085-0.0018-0.00450.061-0.1781-0.3062-0.1886-0.17840.3669-0.02090.07250.3705-0.05940.300445.9179128.016459.1703
693.387-0.70123.11633.03860.09653.1997-0.10340.2337-0.52720.19690.1586-0.20070.02920.23590.02350.30380.11790.10810.5092-0.06330.386334.1249108.049228.1585
701.7713-0.80831.46640.4475-0.78791.3987-0.30740.4591-0.9957-0.77790.1356-0.14691.12080.13230.20730.9569-0.1860.21721.4323-0.41630.702522.138995.402927.3534
714.97980.70561.86413.80161.03543.5709-0.15870.01690.4349-0.40790.1210.0271-0.33580.29780.01070.166-0.05420.07970.18850.01060.308822.2131114.298924.7861
724.58020.78052.10595.3025-1.72646.2610.23490.303-0.8883-0.60950.3468-0.07330.8890.2224-0.45270.41190.0253-0.03620.4309-0.12560.620229.1295104.748621.4729
731.64920.30951.85150.39820.63242.3010.01740.1718-0.1110.07850.0457-0.1152-0.04110.0727-0.01680.24040.00490.09130.2896-0.01460.354439.4926113.906742.3159
741.7557-3.37160.35899.2858-2.70893.63740.30.09650.26350.4221-0.08580.72220.0139-0.2108-0.18310.3525-0.120.17460.49330.01080.529541.9201114.382646.8939
752.1360.1014-0.98282.73331.0675.261-0.067-0.09390.14390.59720.3121-0.14740.66710.1733-0.24360.2863-0.01290.02160.3021-0.07560.416546.6424108.545255.4683
763.0139-1.20670.33657.609-2.54486.3104-0.4965-0.3397-0.17710.43280.2326-0.17790.03960.77730.35390.34250.05930.13030.5007-0.13260.381854.029109.133250.5979
771.90480.0698-0.45121.30020.33733.27890.0896-0.63410.36080.1453-0.12950.24150.18620.16150.09990.2697-0.10340.03390.4986-0.07780.6074-59.18475.943951.456
783.30921.2983-0.84144.581-0.47174.70280.0440.11190.12530.28080.1456-0.16990.01480.0608-0.24540.3182-0.02610.02230.4985-0.15440.362-23.360220.106571.7564
794.37490.1968-2.03820.83511.00362.9263-0.08880.8298-0.041-0.19580.3248-0.2853-0.04380.433-0.19950.3505-0.08460.07091.1384-0.08840.5647-34.33295.128338.6776
808.2655-0.46656.89320.0266-0.38945.7481.1790.2959-1.7957-0.270.5259-0.50950.70070.0537-1.62161.05780.0859-0.13021.044-0.15280.9152-46.9191-7.961837.0843
814.03591.7846-0.09243.12221.3140.8017-0.4180.32930.1978-0.63240.39780.1418-0.6580.95590.01890.3457-0.21730.0190.57280.04930.5544-46.995610.914536.2159
825.19931.2592-0.64262.34480.60574.3689-0.13221.07170.5254-0.47360.47250.32-0.38711.0812-0.33220.3473-0.1445-0.04430.89740.08850.4986-40.17896.892536.1879
831.66290.27850.76531.13960.20191.0799-0.2720.54320.4944-0.2320.3483-0.3081-0.00050.96510.07350.2635-0.06660.0740.87570.00210.7004-29.46268.955650.7396
840.6099-0.4651-1.30791.94670.91152.8757-0.09070.64970.01110.27740.7075-0.38780.40220.3361-0.41020.3787-0.0459-0.09870.7988-0.10550.5448-23.1939.216170.5697
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1003.26650.48930.99651.8682-0.66384.8366-0.0846-0.37190.1671-0.0655-0.17160.2452-0.1562-0.57430.11180.38120.07260.07860.395-0.0630.4981-83.38761.0947-37.0827
1011.583-0.34341.38430.5046-0.57191.9006-0.29-0.22450.24090.22720.13250.0805-0.0058-0.36390.14620.29980.10220.02290.4009-0.10720.4313-101.898667.7874-56.1753
1022.90690.22291.45531.5255-0.16263.2688-0.0988-0.07590.4215-0.03490.00850.2513-0.0664-0.16830.04420.4520.05350.0570.3502-0.04220.539-99.417965.7852-55.2735
1033.0263-0.0913-1.79894.54271.32175.3198-0.31380.2088-0.1151-0.14420.12040.75060.5706-0.7630.2060.302-0.01520.01330.5212-0.08730.5158-108.509362.641-61.1053
1041.5616-0.28710.65631.51410.40724.18860.22450.4070.0386-0.3937-0.36660.12920.1428-0.09880.15050.5330.23050.01910.3478-0.00930.4215-32.5655109.7781-53.1841
1050.89540.56941.47341.0162-0.16344.0124-0.15010.0401-0.02940.07370.18110.27460.0219-0.0222-0.1060.42910.14590.07940.3932-0.05590.2711-58.4377126.8856-70.8977
1060.90511.09531.24542.1337-0.12794.8835-0.08140.01750.4696-0.15130.24080.2349-0.7497-0.3699-0.14220.42870.09970.09280.3501-0.04440.3358-66.2444134.9885-78.7544
1072.66171.6031.45634.9315-1.81872.6394-0.04030.14280.0362-0.36180.0807-0.36620.4008-0.53790.03180.48660.09950.19930.9301-0.13010.3335-56.4895115.9427-40.8343
108-0.0010.0022-0.00160.0033-0.00370.00040.0373-0.4685-0.42790.57110.60030.1202-0.7365-0.1059-0.59861.33010.04890.30240.6072-0.0020.865-47.6701102.1534-36.3764
1093.0608-1.04180.53414.07920.2453.30830.0890.34220.2667-0.2443-0.1516-0.4753-0.2667-0.30910.11730.48520.23530.08110.4506-0.08080.4497-44.3943120.3211-44.4098
1102.9405-1.321-0.76475.23291.15142.94370.0287-0.1720.09390.0835-0.1079-0.2053-0.26-0.87880.09380.48160.1503-0.02530.5436-0.10620.3821-48.7968117.442-38.496
1112.43430.40441.86291.35221.76785.8882-0.4388-0.15980.20250.4368-0.01770.32890.4587-0.27650.46250.43140.12730.14790.4684-0.04660.4491-69.2257122.7554-65.4968
1120.7146-0.2110.59382.49732.34376.4472-0.2426-0.1681-0.23780.36380.36890.0540.64270.5124-0.09620.5650.2410.16110.6978-0.02020.3473-65.0216120.6072-61.4385
1133.5958-1.7782-1.07481.5425-1.17774.6168-0.27630.0135-0.43060.29050.14990.47210.9053-0.96380.13560.4298-0.02910.1330.50340.03430.4099-72.2108116.0194-68.822
1143.911-0.2074-1.59774.2160.24616.2612-0.7501-0.4491-0.17630.1750.38760.55070.2806-1.54950.36090.3570.21040.14810.62390.06490.4499-78.026120.219-63.2383
1154.75680.60631.02724.0836-0.49821.8818-0.05230.33050.1324-0.645-0.0766-0.2228-0.37680.04550.2810.90210.412-0.08750.76450.02290.2786-104.80567.1071-49.9081
1162.36840.86590.17623.0978-0.02865.6802-0.12230.5905-0.2640.0407-0.074-0.2071-0.1398-0.29250.20870.54430.1915-0.04930.3303-0.06860.4672-102.8835-1.5265-40.9223
1172.15590.0585-0.62052.8343-0.55974.09040.15890.7187-0.71870.0363-0.5115-0.07690.08810.00210.28180.73860.2701-0.05410.619-0.03950.5794-100.5214-3.822-47.5058
1181.965-1.4739-0.33671.38990.2791.9649-0.02250.34760.0940.0346-0.2178-0.03560.0487-0.35330.13750.72850.1865-0.08010.3291-0.02910.5118-102.5263-3.554-37.0919
1193.0681-0.69233.1790.2866-0.95163.6848-0.02090.4463-0.10270.09340.0272-0.24230.38790.4707-0.02980.59070.2401-0.04250.4128-0.11610.6211-117.4629.8666-55.037
1202.9667-0.28371.41144.3165-0.09947.3663-0.1852-0.85760.03440.49920.34211.2374-0.5103-1.0056-0.11890.61460.13610.11120.6216-0.02270.7919-144.645123.5134-59.5361
1212.80130.14031.53852.9557-0.1836.4183-0.0392-0.28250.26770.31820.1643-0.2596-0.22991.58450.04430.3999-0.01660.00690.6929-0.12390.2857-125.831921.9189-62.6789
1222.78232.62321.31253.0823-0.33576.93320.0247-0.17750.12590.38570.1885-0.34420.51770.5478-0.19070.42060.1233-0.11970.5212-0.05440.4079-129.174717.8057-57.4842
1232.07972.20491.58144.1338-0.51687.2157-0.2732-0.28890.88450.36240.2050.7536-0.7958-0.40850.00470.6170.0923-0.02450.4181-0.10210.7618-137.711328.2505-62.3861
1246.63851.26793.24651.3794-1.10875.06780.08530.77160.6923-0.1830.05130.02580.00890.4403-0.0050.55380.10530.07850.5216-0.00010.4801-132.361524.0385-69.4938
1251.1567-1.7910.86633.2507-0.62912.79720.00370.7351-1.6997-0.2628-0.90291.30730.1982-0.59840.88770.72420.1520.14770.9881-0.56871.2851-126.97093.8757-29.4752
1260.9484-1.4340.90062.2819-1.58841.33420.13310.6689-1.9494-0.2092-1.02961.62351.0322-0.31030.87611.2277-0.17080.39871.1438-0.26441.3817-118.8931-9.8733-26.4606
1273.2172-2.12230.40074.615-0.36010.08170.28630.63650.0861-0.4386-0.46740.671-0.358-0.45130.17870.77850.4772-0.12090.7935-0.31720.594-114.56337.7775-32.384
1283.2041-1.99860.85634.1344-1.55390.591-0.1478-0.20590.21580.7768-0.13510.6748-0.6134-0.50350.26370.8510.3042-0.06540.7469-0.21930.6063-112.18136.0134-20.4432
1291.55390.00660.95361.88590.16054.8486-0.6832-0.0326-0.47680.4045-0.05380.4472-0.6285-1.26630.69270.91540.33910.16881.1182-0.37241.1219-122.42845.9643-23.4095
1301.7791-0.52341.04941.1284-1.4812.0171-0.4405-0.3580.0160.10250.51990.09430.0653-0.2821-0.01720.68420.20780.04120.828-0.32350.7669-119.69821.6062-33.6389
1312.4874-0.9350.84371.6393-1.33531.106-0.2066-0.40770.30080.49120.4743-0.0681-0.0676-0.2208-0.26470.497-0.0187-0.090.59430.03310.5611-140.586617.0409-48.1418
1321.9826-0.88170.78051.0975-0.71323.7932-0.22670.2267-0.0336-0.00210.2912-0.04220.4326-0.1444-0.23390.42230.0099-0.14740.5205-0.0330.6629-138.715712.7806-61.7547
1332.5834-0.4860.60472.8247-0.92482.6248-0.2224-0.4422-0.16970.15820.54090.0770.25450.0679-0.21370.61720.0623-0.06030.61760.04030.5037-136.29689.6848-48.4211
1343.9033-0.7641-3.3196.82711.1399.2902-0.10590.4258-0.1703-0.10920.3362-0.25161.5739-0.156-0.2230.54030.0238-0.07330.29120.00480.4735-139.77197.2022-60.4811
1357.24272.77-1.88249.15455.71185.9357-0.22150.4115-0.1763-0.30190.36990.310.7641-1.0296-0.22380.557-0.036-0.08950.61590.15030.4501-147.03678.6796-52.4389
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 41 through 65 )
2X-RAY DIFFRACTION2chain 'A' and (resid 66 through 135 )
3X-RAY DIFFRACTION3chain 'A' and (resid 136 through 195 )
4X-RAY DIFFRACTION4chain 'A' and (resid 196 through 260 )
5X-RAY DIFFRACTION5chain 'A' and (resid 261 through 280 )
6X-RAY DIFFRACTION6chain 'A' and (resid 281 through 298 )
7X-RAY DIFFRACTION7chain 'A' and (resid 299 through 312 )
8X-RAY DIFFRACTION8chain 'B' and (resid 39 through 65 )
9X-RAY DIFFRACTION9chain 'B' and (resid 66 through 99 )
10X-RAY DIFFRACTION10chain 'B' and (resid 100 through 127 )
11X-RAY DIFFRACTION11chain 'B' and (resid 128 through 147 )
12X-RAY DIFFRACTION12chain 'B' and (resid 148 through 175 )
13X-RAY DIFFRACTION13chain 'B' and (resid 176 through 195 )
14X-RAY DIFFRACTION14chain 'B' and (resid 196 through 214 )
15X-RAY DIFFRACTION15chain 'B' and (resid 215 through 247 )
16X-RAY DIFFRACTION16chain 'B' and (resid 248 through 275 )
17X-RAY DIFFRACTION17chain 'B' and (resid 276 through 298 )
18X-RAY DIFFRACTION18chain 'B' and (resid 299 through 312 )
19X-RAY DIFFRACTION19chain 'C' and (resid 41 through 65 )
20X-RAY DIFFRACTION20chain 'C' and (resid 66 through 99 )
21X-RAY DIFFRACTION21chain 'C' and (resid 100 through 113 )
22X-RAY DIFFRACTION22chain 'C' and (resid 114 through 135 )
23X-RAY DIFFRACTION23chain 'C' and (resid 136 through 163 )
24X-RAY DIFFRACTION24chain 'C' and (resid 164 through 195 )
25X-RAY DIFFRACTION25chain 'C' and (resid 196 through 228 )
26X-RAY DIFFRACTION26chain 'C' and (resid 229 through 260 )
27X-RAY DIFFRACTION27chain 'C' and (resid 261 through 280 )
28X-RAY DIFFRACTION28chain 'C' and (resid 281 through 298 )
29X-RAY DIFFRACTION29chain 'C' and (resid 299 through 312 )
30X-RAY DIFFRACTION30chain 'D' and (resid 40 through 65 )
31X-RAY DIFFRACTION31chain 'D' and (resid 66 through 99 )
32X-RAY DIFFRACTION32chain 'D' and (resid 100 through 163 )
33X-RAY DIFFRACTION33chain 'D' and (resid 164 through 184 )
34X-RAY DIFFRACTION34chain 'D' and (resid 185 through 201 )
35X-RAY DIFFRACTION35chain 'D' and (resid 202 through 228 )
36X-RAY DIFFRACTION36chain 'D' and (resid 229 through 260 )
37X-RAY DIFFRACTION37chain 'D' and (resid 261 through 280 )
38X-RAY DIFFRACTION38chain 'D' and (resid 281 through 312 )
39X-RAY DIFFRACTION39chain 'E' and (resid 40 through 65 )
40X-RAY DIFFRACTION40chain 'E' and (resid 66 through 113 )
41X-RAY DIFFRACTION41chain 'E' and (resid 114 through 135 )
42X-RAY DIFFRACTION42chain 'E' and (resid 136 through 163 )
43X-RAY DIFFRACTION43chain 'E' and (resid 164 through 195 )
44X-RAY DIFFRACTION44chain 'E' and (resid 196 through 228 )
45X-RAY DIFFRACTION45chain 'E' and (resid 229 through 247 )
46X-RAY DIFFRACTION46chain 'E' and (resid 248 through 298 )
47X-RAY DIFFRACTION47chain 'E' and (resid 299 through 312 )
48X-RAY DIFFRACTION48chain 'F' and (resid 39 through 65 )
49X-RAY DIFFRACTION49chain 'F' and (resid 66 through 104 )
50X-RAY DIFFRACTION50chain 'F' and (resid 105 through 122 )
51X-RAY DIFFRACTION51chain 'F' and (resid 123 through 146 )
52X-RAY DIFFRACTION52chain 'F' and (resid 147 through 195 )
53X-RAY DIFFRACTION53chain 'F' and (resid 196 through 228 )
54X-RAY DIFFRACTION54chain 'F' and (resid 229 through 260 )
55X-RAY DIFFRACTION55chain 'F' and (resid 261 through 312 )
56X-RAY DIFFRACTION56chain 'G' and (resid 1 through 131 )
57X-RAY DIFFRACTION57chain 'G' and (resid 132 through 236 )
58X-RAY DIFFRACTION58chain 'H' and (resid 2 through 23 )
59X-RAY DIFFRACTION59chain 'H' and (resid 24 through 35 )
60X-RAY DIFFRACTION60chain 'H' and (resid 36 through 85 )
61X-RAY DIFFRACTION61chain 'H' and (resid 86 through 107 )
62X-RAY DIFFRACTION62chain 'H' and (resid 108 through 152 )
63X-RAY DIFFRACTION63chain 'H' and (resid 153 through 189 )
64X-RAY DIFFRACTION64chain 'H' and (resid 190 through 213 )
65X-RAY DIFFRACTION65chain 'I' and (resid 1 through 99 )
66X-RAY DIFFRACTION66chain 'I' and (resid 100 through 131 )
67X-RAY DIFFRACTION67chain 'I' and (resid 132 through 163 )
68X-RAY DIFFRACTION68chain 'I' and (resid 164 through 238 )
69X-RAY DIFFRACTION69chain 'J' and (resid 1 through 23 )
70X-RAY DIFFRACTION70chain 'J' and (resid 24 through 35 )
71X-RAY DIFFRACTION71chain 'J' and (resid 36 through 63 )
72X-RAY DIFFRACTION72chain 'J' and (resid 64 through 77 )
73X-RAY DIFFRACTION73chain 'J' and (resid 78 through 152 )
74X-RAY DIFFRACTION74chain 'J' and (resid 153 through 173 )
75X-RAY DIFFRACTION75chain 'J' and (resid 174 through 199 )
76X-RAY DIFFRACTION76chain 'J' and (resid 200 through 213 )
77X-RAY DIFFRACTION77chain 'K' and (resid 1 through 131 )
78X-RAY DIFFRACTION78chain 'K' and (resid 132 through 235 )
79X-RAY DIFFRACTION79chain 'L' and (resid 2 through 23 )
80X-RAY DIFFRACTION80chain 'L' and (resid 24 through 35 )
81X-RAY DIFFRACTION81chain 'L' and (resid 36 through 63 )
82X-RAY DIFFRACTION82chain 'L' and (resid 64 through 93 )
83X-RAY DIFFRACTION83chain 'L' and (resid 94 through 123 )
84X-RAY DIFFRACTION84chain 'L' and (resid 124 through 141 )
85X-RAY DIFFRACTION85chain 'L' and (resid 142 through 173 )
86X-RAY DIFFRACTION86chain 'L' and (resid 174 through 189 )
87X-RAY DIFFRACTION87chain 'L' and (resid 190 through 212 )
88X-RAY DIFFRACTION88chain 'M' and (resid 1 through 17 )
89X-RAY DIFFRACTION89chain 'M' and (resid 18 through 60 )
90X-RAY DIFFRACTION90chain 'M' and (resid 61 through 83 )
91X-RAY DIFFRACTION91chain 'M' and (resid 84 through 119 )
92X-RAY DIFFRACTION92chain 'M' and (resid 120 through 131 )
93X-RAY DIFFRACTION93chain 'M' and (resid 132 through 185 )
94X-RAY DIFFRACTION94chain 'M' and (resid 186 through 197 )
95X-RAY DIFFRACTION95chain 'M' and (resid 198 through 235 )
96X-RAY DIFFRACTION96chain 'N' and (resid 1 through 23 )
97X-RAY DIFFRACTION97chain 'N' and (resid 24 through 35 )
98X-RAY DIFFRACTION98chain 'N' and (resid 36 through 63 )
99X-RAY DIFFRACTION99chain 'N' and (resid 64 through 77 )
100X-RAY DIFFRACTION100chain 'N' and (resid 78 through 99 )
101X-RAY DIFFRACTION101chain 'N' and (resid 100 through 152 )
102X-RAY DIFFRACTION102chain 'N' and (resid 153 through 173 )
103X-RAY DIFFRACTION103chain 'N' and (resid 174 through 212 )
104X-RAY DIFFRACTION104chain 'O' and (resid 1 through 119 )
105X-RAY DIFFRACTION105chain 'O' and (resid 120 through 197 )
106X-RAY DIFFRACTION106chain 'O' and (resid 198 through 235 )
107X-RAY DIFFRACTION107chain 'P' and (resid 1 through 23 )
108X-RAY DIFFRACTION108chain 'P' and (resid 24 through 35 )
109X-RAY DIFFRACTION109chain 'P' and (resid 36 through 50 )
110X-RAY DIFFRACTION110chain 'P' and (resid 51 through 108 )
111X-RAY DIFFRACTION111chain 'P' and (resid 109 through 152 )
112X-RAY DIFFRACTION112chain 'P' and (resid 153 through 173 )
113X-RAY DIFFRACTION113chain 'P' and (resid 174 through 199 )
114X-RAY DIFFRACTION114chain 'P' and (resid 200 through 212 )
115X-RAY DIFFRACTION115chain 'Q' and (resid 1 through 17 )
116X-RAY DIFFRACTION116chain 'Q' and (resid 18 through 60 )
117X-RAY DIFFRACTION117chain 'Q' and (resid 61 through 83 )
118X-RAY DIFFRACTION118chain 'Q' and (resid 84 through 119 )
119X-RAY DIFFRACTION119chain 'Q' and (resid 120 through 144 )
120X-RAY DIFFRACTION120chain 'Q' and (resid 145 through 163 )
121X-RAY DIFFRACTION121chain 'Q' and (resid 164 through 177 )
122X-RAY DIFFRACTION122chain 'Q' and (resid 178 through 197 )
123X-RAY DIFFRACTION123chain 'Q' and (resid 198 through 220 )
124X-RAY DIFFRACTION124chain 'Q' and (resid 221 through 235 )
125X-RAY DIFFRACTION125chain 'R' and (resid 1 through 20 )
126X-RAY DIFFRACTION126chain 'R' and (resid 21 through 35 )
127X-RAY DIFFRACTION127chain 'R' and (resid 36 through 50 )
128X-RAY DIFFRACTION128chain 'R' and (resid 51 through 63 )
129X-RAY DIFFRACTION129chain 'R' and (resid 64 through 85 )
130X-RAY DIFFRACTION130chain 'R' and (resid 86 through 108 )
131X-RAY DIFFRACTION131chain 'R' and (resid 109 through 123 )
132X-RAY DIFFRACTION132chain 'R' and (resid 124 through 141 )
133X-RAY DIFFRACTION133chain 'R' and (resid 142 through 173 )
134X-RAY DIFFRACTION134chain 'R' and (resid 174 through 189 )
135X-RAY DIFFRACTION135chain 'R' and (resid 190 through 212 )

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る