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Yorodumi- PDB-5vpf: Transcription factor FosB/JunD bZIP domain in complex with cognat... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 5vpf | |||||||||
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| Title | Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-II crystal | |||||||||
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Keywords | transcription/dna / activator protein-1 / basic leucine zipper / bZIP / fos / jun / transcription factor / DNA-binding protein / redox switch / coiled-coil / transcription-dna complex | |||||||||
| Function / homology | Function and homology informationtranscription factor AP-1 complex / positive regulation of peroxisome proliferator activated receptor signaling pathway / NGF-stimulated transcription / positive regulation of macrophage activation / cellular response to fatty acid / response to steroid hormone / osteoblast development / response to morphine / response to corticosterone / response to light stimulus ...transcription factor AP-1 complex / positive regulation of peroxisome proliferator activated receptor signaling pathway / NGF-stimulated transcription / positive regulation of macrophage activation / cellular response to fatty acid / response to steroid hormone / osteoblast development / response to morphine / response to corticosterone / response to light stimulus / response to cAMP / response to mechanical stimulus / positive regulation of osteoblast differentiation / cellular response to hormone stimulus / behavioral response to cocaine / transcription repressor complex / cellular response to calcium ion / response to progesterone / response to amphetamine / nuclear receptor binding / transcription coregulator binding / response to nicotine / female pregnancy / protein-DNA complex / circadian rhythm / response to peptide hormone / RNA polymerase II transcription regulator complex / sequence-specific double-stranded DNA binding / regulation of cell population proliferation / DNA-binding transcription activator activity, RNA polymerase II-specific / response to ethanol / response to lipopolysaccharide / transcription regulator complex / cellular response to hypoxia / Estrogen-dependent gene expression / transcription by RNA polymerase II / DNA-binding transcription factor activity, RNA polymerase II-specific / transcription coactivator activity / transcription cis-regulatory region binding / regulation of cell cycle / RNA polymerase II cis-regulatory region sequence-specific DNA binding / response to xenobiotic stimulus / intracellular membrane-bounded organelle / regulation of transcription by RNA polymerase II / chromatin / enzyme binding / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / nucleus / cytosol Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.694 Å | |||||||||
Authors | Yin, Z. / Rudenko, G. / Machius, M. | |||||||||
| Funding support | United States, 2items
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Citation | Journal: Nucleic Acids Res. / Year: 2017Title: Activator Protein-1: redox switch controlling structure and DNA-binding. Authors: Yin, Z. / Machius, M. / Nestler, E.J. / Rudenko, G. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5vpf.cif.gz | 277.8 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5vpf.ent.gz | 226.1 KB | Display | PDB format |
| PDBx/mmJSON format | 5vpf.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5vpf_validation.pdf.gz | 484.7 KB | Display | wwPDB validaton report |
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| Full document | 5vpf_full_validation.pdf.gz | 486.9 KB | Display | |
| Data in XML | 5vpf_validation.xml.gz | 14.1 KB | Display | |
| Data in CIF | 5vpf_validation.cif.gz | 19.8 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vp/5vpf ftp://data.pdbj.org/pub/pdb/validation_reports/vp/5vpf | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5vpaC ![]() 5vpbC ![]() 5vpcC ![]() 5vpdC ![]() 5vpeC ![]() 1fosS C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| 2 | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
United States, 2items
Citation













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