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Yorodumi- PDB-5vpf: Transcription factor FosB/JunD bZIP domain in complex with cognat... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5vpf | |||||||||
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Title | Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-II crystal | |||||||||
Components |
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Keywords | transcription/dna / activator protein-1 / basic leucine zipper / bZIP / fos / jun / transcription factor / DNA-binding protein / redox switch / coiled-coil / transcription-dna complex | |||||||||
Function / homology | Function and homology information transcription factor AP-1 complex / NGF-stimulated transcription / response to morphine / osteoblast development / response to corticosterone / behavioral response to cocaine / positive regulation of osteoblast differentiation / response to mechanical stimulus / cellular response to hormone stimulus / response to cAMP ...transcription factor AP-1 complex / NGF-stimulated transcription / response to morphine / osteoblast development / response to corticosterone / behavioral response to cocaine / positive regulation of osteoblast differentiation / response to mechanical stimulus / cellular response to hormone stimulus / response to cAMP / response to amphetamine / cellular response to calcium ion / transcription repressor complex / transcription coregulator binding / response to progesterone / female pregnancy / RNA polymerase II transcription regulator complex / sequence-specific double-stranded DNA binding / regulation of cell population proliferation / gene expression / DNA-binding transcription activator activity, RNA polymerase II-specific / response to ethanol / Estrogen-dependent gene expression / transcription regulator complex / transcription by RNA polymerase II / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / regulation of cell cycle / response to xenobiotic stimulus / RNA polymerase II cis-regulatory region sequence-specific DNA binding / intracellular membrane-bounded organelle / chromatin / regulation of transcription by RNA polymerase II / enzyme binding / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / nucleus / cytosol Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.694 Å | |||||||||
Authors | Yin, Z. / Rudenko, G. / Machius, M. | |||||||||
Funding support | United States, 2items
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Citation | Journal: Nucleic Acids Res. / Year: 2017 Title: Activator Protein-1: redox switch controlling structure and DNA-binding. Authors: Yin, Z. / Machius, M. / Nestler, E.J. / Rudenko, G. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5vpf.cif.gz | 277.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5vpf.ent.gz | 226.1 KB | Display | PDB format |
PDBx/mmJSON format | 5vpf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5vpf_validation.pdf.gz | 484.7 KB | Display | wwPDB validaton report |
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Full document | 5vpf_full_validation.pdf.gz | 486.9 KB | Display | |
Data in XML | 5vpf_validation.xml.gz | 14.1 KB | Display | |
Data in CIF | 5vpf_validation.cif.gz | 19.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vp/5vpf ftp://data.pdbj.org/pub/pdb/validation_reports/vp/5vpf | HTTPS FTP |
-Related structure data
Related structure data | 5vpaC 5vpbC 5vpcC 5vpdC 5vpeC 1fosS C: citing same article (ref.) S: Starting model for refinement |
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Similar structure data |
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-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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