- PDB-5vdf: Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5vdf
Title
Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II
Components
Metal homeostasis factor ATX1
Keywords
METAL BINDING PROTEIN / Atx1 / metallochaperone / copper transfer / metal-binding domain / ferredoxin-like fold
Function / homology
Function and homology information
copper chaperone activity / copper ion transport / cellular response to oxidative stress / intracellular iron ion homeostasis / metal ion binding / cytosol Similarity search - Function
Resolution: 1.93→58.09 Å / Cor.coef. Fo:Fc: 0.953 / Cor.coef. Fo:Fc free: 0.924 / SU B: 4.648 / SU ML: 0.13 / Cross valid method: THROUGHOUT / ESU R: 0.168 / ESU R Free: 0.157 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.24175
2301
5.1 %
RANDOM
Rwork
0.19542
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obs
0.19782
42701
99.48 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK