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Open data
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Basic information
| Entry | Database: PDB / ID: 5v5v | ||||||||||||
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| Title | Complex of NLGN2 with MDGA1 Ig1-Ig2 | ||||||||||||
Components |
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Keywords | CELL ADHESION / synaptic organizers / regulatory complex / neuroligins / MDGAs | ||||||||||||
| Function / homology | Function and homology informationspinal cord association neuron differentiation / jump response / neurotransmitter-gated ion channel clustering / positive regulation of t-SNARE clustering / postsynaptic specialization assembly / gephyrin clustering involved in postsynaptic density assembly / terminal button organization / postsynaptic density protein 95 clustering / positive regulation of synaptic vesicle clustering / postsynaptic membrane assembly ...spinal cord association neuron differentiation / jump response / neurotransmitter-gated ion channel clustering / positive regulation of t-SNARE clustering / postsynaptic specialization assembly / gephyrin clustering involved in postsynaptic density assembly / terminal button organization / postsynaptic density protein 95 clustering / positive regulation of synaptic vesicle clustering / postsynaptic membrane assembly / Neurexins and neuroligins / presynaptic membrane assembly / neurexin family protein binding / cerebral cortex radially oriented cell migration / Post-translational modification: synthesis of GPI-anchored proteins / presynapse assembly / thigmotaxis / neuron cell-cell adhesion / regulation of respiratory gaseous exchange by nervous system process / insulin metabolic process / ribbon synapse / inhibitory synapse / protein localization to synapse / dopaminergic synapse / serotonin metabolic process / positive regulation of inhibitory postsynaptic potential / glycinergic synapse / inhibitory synapse assembly / protein localization to cell surface / positive regulation of synapse assembly / regulation of synaptic membrane adhesion / neuromuscular process controlling balance / postsynaptic specialization membrane / positive regulation of protein localization to synapse / synaptic transmission, GABAergic / positive regulation of dendritic spine development / dopamine metabolic process / locomotory exploration behavior / social behavior / prepulse inhibition / regulation of presynapse assembly / positive regulation of synaptic transmission, glutamatergic / side of membrane / synapse assembly / cell adhesion molecule binding / excitatory synapse / sensory perception of pain / positive regulation of excitatory postsynaptic potential / dendritic shaft / positive regulation of synaptic transmission, GABAergic / positive regulation of insulin secretion / synapse organization / brain development / modulation of chemical synaptic transmission / GABA-ergic synapse / neuron migration / nervous system development / presynaptic membrane / postsynaptic membrane / axon / positive regulation of cell population proliferation / synapse / dendrite / cell surface / Golgi apparatus / extracellular space / extracellular region / identical protein binding / plasma membrane Similarity search - Function | ||||||||||||
| Biological species | ![]() Homo sapiens (human) | ||||||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 4.11 Å | ||||||||||||
Authors | Gangwar, S.P. / Machius, M. / Rudenko, G. | ||||||||||||
| Funding support | United States, 3items
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Citation | Journal: Neuron / Year: 2017Title: Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges. Authors: Gangwar, S.P. / Zhong, X. / Seshadrinathan, S. / Chen, H. / Machius, M. / Rudenko, G. | ||||||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5v5v.cif.gz | 1.7 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb5v5v.ent.gz | 1.4 MB | Display | PDB format |
| PDBx/mmJSON format | 5v5v.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/v5/5v5v ftp://data.pdbj.org/pub/pdb/validation_reports/v5/5v5v | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 5v5wC ![]() 3bl8S C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Refine code: _
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Movie
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Components
About Yorodumi





Homo sapiens (human)
X-RAY DIFFRACTION
United States, 3items
Citation











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