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- PDB-5trs: Structure of Mycobacterium tuberculosis proteasome in complex wit... -

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基本情報

登録情報
データベース: PDB / ID: 5trs
タイトルStructure of Mycobacterium tuberculosis proteasome in complex with N,C-capped dipeptide PKS2144
要素
  • Proteasome subunit alpha
  • Proteasome subunit beta
キーワードHYDROLASE/HYDROLASE inhibitor / Mycobacterium tuberculosis / proteasome / N / C-capped dipeptide / HYDROLASE-HYDROLASE inhibitor complex
機能・相同性
機能・相同性情報


symbiont-mediated perturbation of host defenses / zymogen binding / proteasome endopeptidase complex / proteasome core complex, beta-subunit complex / proteasome core complex, alpha-subunit complex / threonine-type endopeptidase activity / proteasomal protein catabolic process / peptidoglycan-based cell wall / proteolysis involved in protein catabolic process / modification-dependent protein catabolic process ...symbiont-mediated perturbation of host defenses / zymogen binding / proteasome endopeptidase complex / proteasome core complex, beta-subunit complex / proteasome core complex, alpha-subunit complex / threonine-type endopeptidase activity / proteasomal protein catabolic process / peptidoglycan-based cell wall / proteolysis involved in protein catabolic process / modification-dependent protein catabolic process / proteasome-mediated ubiquitin-dependent protein catabolic process / extracellular region / plasma membrane / cytoplasm
類似検索 - 分子機能
Proteasome, alpha subunit, bacterial / Proteasome subunit beta, actinobacteria / Aminohydrolase, N-terminal nucleophile (Ntn) domain / Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 / : / Proteasome alpha-type subunit / Proteasome alpha-type subunit profile. / Proteasome B-type subunit / Proteasome beta-type subunit profile. / Proteasome subunit ...Proteasome, alpha subunit, bacterial / Proteasome subunit beta, actinobacteria / Aminohydrolase, N-terminal nucleophile (Ntn) domain / Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 / : / Proteasome alpha-type subunit / Proteasome alpha-type subunit profile. / Proteasome B-type subunit / Proteasome beta-type subunit profile. / Proteasome subunit / Proteasome, subunit alpha/beta / Nucleophile aminohydrolases, N-terminal / 4-Layer Sandwich / Alpha Beta
類似検索 - ドメイン・相同性
N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide / Chem-7HZ / Proteasome subunit alpha / Proteasome subunit beta / Proteasome subunit beta / Proteasome subunit alpha
類似検索 - 構成要素
生物種Mycobacterium tuberculosis (結核菌)
手法X線回折 / シンクロトロン / 解像度: 3.08356699278 Å
データ登録者Hsu, H.-C. / Fan, H. / Singh, P.K. / Wang, R. / Sukenick, G. / Nathan, C. / Lin, G. / Li, H.
資金援助 米国, 1件
組織認可番号国
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)R01 AI070285 米国
引用ジャーナル: Biochemistry / 年: 2017
タイトル: Structural Basis for the Species-Selective Binding of N,C-Capped Dipeptides to the Mycobacterium tuberculosis Proteasome.
著者: Hsu, H.C. / Singh, P.K. / Fan, H. / Wang, R. / Sukenick, G. / Nathan, C. / Lin, G. / Li, H.
履歴
登録2016年10月27日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02017年1月11日Provider: repository / タイプ: Initial release
改定 1.12017年1月18日Group: Database references
改定 1.22017年8月23日Group: Data collection / Refinement description / カテゴリ: diffrn_detector / software / Item: _diffrn_detector.detector / _software.name
改定 1.32017年9月27日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.42019年12月11日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.52024年3月6日Group: Data collection / Database references / カテゴリ: chem_comp_atom / chem_comp_bond / database_2
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
A: Proteasome subunit alpha
B: Proteasome subunit alpha
C: Proteasome subunit alpha
D: Proteasome subunit alpha
E: Proteasome subunit alpha
F: Proteasome subunit alpha
G: Proteasome subunit alpha
H: Proteasome subunit beta
I: Proteasome subunit beta
J: Proteasome subunit beta
K: Proteasome subunit beta
L: Proteasome subunit beta
M: Proteasome subunit beta
N: Proteasome subunit beta
O: Proteasome subunit alpha
P: Proteasome subunit alpha
Q: Proteasome subunit alpha
R: Proteasome subunit alpha
S: Proteasome subunit alpha
T: Proteasome subunit alpha
U: Proteasome subunit alpha
V: Proteasome subunit beta
W: Proteasome subunit beta
X: Proteasome subunit beta
Y: Proteasome subunit beta
Z: Proteasome subunit beta
a: Proteasome subunit beta
b: Proteasome subunit beta
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)725,19842
ポリマ－717,44728
非ポリマー7,75014
水1,65792
1


  • 登録構造と同一
  • 登録者・ソフトウェアが定義した集合体
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area84620 Å2
ΔGint-80 kcal/mol
Surface area219410 Å2
手法PISA
単位格子
Length a, b, c (Å)120.509, 198.301, 165.941
Angle α, β, γ (deg.)90.000, 103.133, 90.000
Int Tables number4
Space group name H-MP1211
Space group name HallP2yb
Symmetry operation#1: x,y,z
#2: -x,y+1/2,-z
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID
11
21
31
41
51
61
71
81
91
101
111
121
131
141
12
22
32
42
52
62
72
82
92
102
112
122
132
142

NCSドメイン領域:
Dom-IDComponent-IDEns-IDSelection detailsAuth asym-IDAuth seq-ID
111(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 7
121(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N8
131(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
141(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
151(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
161(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
171(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
181(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
191(CHAIN N AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...N1 - 223
211(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 7
221(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H8
231(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
241(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
251(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
261(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
271(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
281(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
291(CHAIN H AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...H1 - 222
311(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 7
321(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I8
331(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
341(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
351(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
361(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
371(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
381(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
391(CHAIN I AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...I1 - 222
411(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 7
421(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J8
431(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
441(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
451(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
461(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
471(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
481(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
491(CHAIN J AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...J1 - 222
511(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 7
521(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K8
531(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
541(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
551(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
561(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
571(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
581(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
591(CHAIN K AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...K1 - 223
611(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 7
621(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L8
631(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
641(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
651(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
661(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
671(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
681(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
691(CHAIN L AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...L1 - 223
711(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 7
721(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M8
731(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
741(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
751(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
761(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
771(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
781(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
791(CHAIN M AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...M1 - 222
811(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 7
821(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V8
831(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
841(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
851(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
861(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
871(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
881(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
891(CHAIN V AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...V1 - 223
911(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 7
921(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W8
931(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
941(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
951(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
961(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
971(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
981(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
991(CHAIN W AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...W1 - 223
1011(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 7
1021(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X8
1031(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1041(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1051(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1061(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1071(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1081(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1091(CHAIN X AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...X1 - 222
1111(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 7
1121(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y8
1131(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1141(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1151(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1161(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1171(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1181(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1191(CHAIN Y AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Y1 - 223
1211(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 7
1221(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z8
1231(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1241(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1251(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1261(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1271(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1281(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1291(CHAIN Z AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...Z1 - 222
1311(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A1 - 7
1321(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A8
1331(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1341(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1351(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1361(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1371(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1381(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1391(CHAIN A AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...A9 - 235
1411(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B1 - 7
1421(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B8
1431(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
1441(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
1451(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
1461(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
1471(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
1481(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
1491(CHAIN B AND (RESSEQ 1:7 OR (RESID 8 AND (NAME...B9 - 236
112(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A12 - 13
122(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A15 - 25
132(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A27 - 34
142(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A35
152(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
162(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
172(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
182(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
192(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
1102(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
1112(CHAIN A AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...A9 - 235
212(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B12 - 13
222(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B15 - 25
232(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B27 - 34
242(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B35
252(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
262(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
272(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
282(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
292(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
2102(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
2112(CHAIN B AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...B9 - 236
312(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C12 - 13
322(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C15 - 25
332(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C27 - 34
342(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C35
352(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
362(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
372(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
382(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
392(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
3102(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
3112(CHAIN C AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...C9 - 236
412(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D12 - 13
422(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D15 - 25
432(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D27 - 34
442(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D35
452(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
462(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
472(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
482(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
492(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
4102(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
4112(CHAIN D AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...D9 - 235
512(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E12 - 13
522(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E15 - 25
532(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E27 - 34
542(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E35
552(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
562(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
572(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
582(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
592(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
5102(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
5112(CHAIN E AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...E9 - 235
612(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F12 - 13
622(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F15 - 25
632(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F27 - 34
642(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F35
652(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
662(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
672(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
682(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
692(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
6102(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
6112(CHAIN F AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...F9 - 234
712(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G12 - 13
722(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G15 - 25
732(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G27 - 34
742(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G35
752(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
762(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
772(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
782(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
792(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
7102(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
7112(CHAIN G AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...G9 - 235
812(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O12 - 13
822(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O15 - 25
832(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O27 - 34
842(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O35
852(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
862(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
872(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
882(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
892(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
8102(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
8112(CHAIN O AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...O9 - 235
912(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P12 - 13
922(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P15 - 25
932(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P27 - 34
942(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P35
952(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
962(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
972(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
982(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
992(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
9102(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
9112(CHAIN P AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...P9 - 236
1012(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q12 - 13
1022(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q15 - 25
1032(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q27 - 34
1042(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q35
1052(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
1062(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
1072(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
1082(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
1092(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
10102(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
10112(CHAIN Q AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...Q9 - 236
1112(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R12 - 13
1122(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R15 - 25
1132(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R27 - 34
1142(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R35
1152(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
1162(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
1172(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
1182(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
1192(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
11102(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
11112(CHAIN R AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...R9 - 234
1212(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S12 - 13
1222(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S15 - 25
1232(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S27 - 34
1242(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S35
1252(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
1262(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
1272(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
1282(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
1292(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
12102(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
12112(CHAIN S AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...S9 - 236
1312(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T12 - 13
1322(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T15 - 25
1332(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T27 - 34
1342(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T35
1352(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
1362(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
1372(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
1382(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
1392(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
13102(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
13112(CHAIN T AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...T9 - 235
1412(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U12 - 13
1422(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U15 - 25
1432(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U27 - 34
1442(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U35
1452(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235
1462(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235
1472(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235
1482(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235
1492(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235
14102(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235
14112(CHAIN U AND (RESSEQ 12:13 OR RESSEQ 15:25 OR RESSEQ...U9 - 235

NCSアンサンブル:
ID
1
2

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要素

#1: タンパク質
Proteasome subunit alpha / 20S proteasome alpha subunit / Proteasome core protein PrcA


分子量: 25971.975 Da / 分子数: 14 / 断片: UNP residues 10-248 / 由来タイプ: 組換発現
由来: (組換発現) Mycobacterium tuberculosis (結核菌)
遺伝子: prcA, MRA_2124 / 発現宿主: Escherichia coli (大腸菌)
参照: UniProt: A5U4D5, UniProt: P9WHU1*PLUS, proteasome endopeptidase complex
#2: タンパク質
Proteasome subunit beta / 20S proteasome beta subunit / Proteasome core protein PrcB


分子量: 25274.264 Da / 分子数: 14 / 断片: UNP residues 58-291 / 由来タイプ: 組換発現
由来: (組換発現) Mycobacterium tuberculosis (結核菌)
遺伝子: prcB, MRA_2125 / 発現宿主: Escherichia coli (大腸菌)
参照: UniProt: A5U4D6, UniProt: P9WHT9*PLUS, proteasome endopeptidase complex
#3: 化合物
ChemComp-7HZ / N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide


タイプ: Non-polymer / クラス: 阻害剤 / 分子量: 553.607 Da / 分子数: 14 / 由来タイプ: 合成 / 式: C28H35N5O7
参照: N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide
#4: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 92 / 由来タイプ: 天然 / 式: H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.93 Å3/Da / 溶媒含有率: 57.98 %
結晶化温度: 277 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 6.2 / 詳細: 60 mM sodium citrate (pH 6.2) and 14% PEG-3350

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: NSLS / ビームライン: X29A / 波長: 1.075 Å
検出器タイプ: ADSC QUANTUM 315 / 検出器: CCD / 日付: 2014年9月16日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1.075 Å / 相対比: 1
反射解像度: 3.08→50 Å / Num. obs: 136892 / % possible obs: 99.9 % / 冗長度: 3.8 % / Biso Wilson estimate: 71.0985836078 Å2 / CC1/2: 0.979 / Rmerge(I) obs: 0.11 / Net I/σ(I): 8.3
反射 シェル解像度: 3.08→3.19 Å / 冗長度: 3.8 % / Rmerge(I) obs: 0.578 / Mean I/σ(I) obs: 3.2 / CC1/2: 0.781 / % possible all: 99.9

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解析

ソフトウェア
名称バージョン分類
PHENIX1.10.1_2155精密化
HKL-2000データ削減
HKL-2000データスケーリング
PHASER位相決定
精密化解像度: 3.08356699278→49.8708274948 Å / SU ML: 0.316432552493 / 交差検証法: FREE R-VALUE / σ(F): 1.33703879814 / 位相誤差: 21.5532798867
立体化学のターゲット値: GeoStd + Monomer Library + CDL v1.2
Rfactor反射数%反射
Rfree0.210710976933 6698 4.89412383639 %
Rwork0.18102232646 130160 -
obs0.182510984638 136858 98.10609319 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso mean: 59.4074637681 Å2
精密化ステップサイクル: LAST / 解像度: 3.08356699278→49.8708274948 Å
タンパク質核酸リガンド溶媒全体
原子数46367 0 560 92 47019
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.0071705389294147628
X-RAY DIFFRACTIONf_angle_d0.7613789496164463
X-RAY DIFFRACTIONf_chiral_restr0.05137480725487286
X-RAY DIFFRACTIONf_plane_restr0.005277439918278470
X-RAY DIFFRACTIONf_dihedral_angle_d16.724278834928374
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3.0836-3.11860.3580240178761560.2843970973613160X-RAY DIFFRACTION71.7904308292
3.1186-3.15530.3250092006312040.2776435052323862X-RAY DIFFRACTION88.2187025385
3.1553-3.19380.286807535672160.2745656036854107X-RAY DIFFRACTION92.2141638225
3.1938-3.23420.295950205122110.258887154514254X-RAY DIFFRACTION96.4988113248
3.2342-3.27670.2734153508822020.2595971924054330X-RAY DIFFRACTION98.2015167931
3.2767-3.32160.2861594508682260.2465474856134378X-RAY DIFFRACTION98.9681857266
3.3216-3.3690.2422023958922040.2312497921594402X-RAY DIFFRACTION99.5246326707
3.369-3.41930.2613534220172170.2359670110164418X-RAY DIFFRACTION99.7203098107
3.4193-3.47270.2745071538222400.2303519273584370X-RAY DIFFRACTION99.7403721333
3.4727-3.52970.2444327252952320.2189738107254404X-RAY DIFFRACTION99.8707453684
3.5297-3.59050.2314946617012480.2207900043274387X-RAY DIFFRACTION99.8707175178
3.5905-3.65580.2780718231852570.2334092107064371X-RAY DIFFRACTION99.9136442142
3.6558-3.72610.2686638097342140.230150855414402X-RAY DIFFRACTION99.8701860666
3.7261-3.80210.2508672100512030.1981284698114448X-RAY DIFFRACTION99.9140708915
3.8021-3.88470.1932988180692190.1889263199874432X-RAY DIFFRACTION99.935539321
3.8847-3.97510.2060476370292430.1868801562434376X-RAY DIFFRACTION99.8486813662
3.9751-4.07440.2196066365972090.1855390728414426X-RAY DIFFRACTION99.9568686651
4.0744-4.18450.221619150512200.1833078916634436X-RAY DIFFRACTION99.9141630901
4.1845-4.30760.198839313642660.1713894652354396X-RAY DIFFRACTION99.9356913183
4.3076-4.44660.2031615018432330.1653284196294390X-RAY DIFFRACTION99.9567567568
4.4466-4.60540.1768328726932150.1635598419474460X-RAY DIFFRACTION99.9358700299
4.6054-4.78960.1854711877712140.1498066640994422X-RAY DIFFRACTION100
4.7896-5.00740.1803517152342220.1500586122634419X-RAY DIFFRACTION100
5.0074-5.27120.1766810926862120.1526528101594464X-RAY DIFFRACTION99.9786187727
5.2712-5.6010.1956878024292060.1567443216714414X-RAY DIFFRACTION100
5.601-6.03280.1993085694342600.17458755934424X-RAY DIFFRACTION99.9786552828
6.0328-6.63860.2235580627352320.1710954500954444X-RAY DIFFRACTION99.9572466866
6.6386-7.59640.1739282475122340.1372417640164431X-RAY DIFFRACTION99.9785683669
7.5964-9.55960.1352588205022330.1089554354594456X-RAY DIFFRACTION100
9.5596-49.87730.1786235374852500.1598388760064477X-RAY DIFFRACTION99.3067226891

+
万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
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関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

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