Entry | Database: PDB / ID: 5lnv |
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Title | Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals |
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Components | Pyridoxal 5'-phosphate synthase subunit PDX1.3 |
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Keywords | LYASE / beta/alpha barrel / pyridoxal phosphate synthase / glutamine amidotransferase / vitamin B6 biosythesis |
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Function / homology | Function and homology information
response to non-ionic osmotic stress / response to lipid hydroperoxide / chlorophyll metabolic process / pyridoxal 5'-phosphate synthase (glutamine hydrolysing) / pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity / pyridoxal phosphate biosynthetic process / hyperosmotic salinity response / pyridoxine biosynthetic process / amino acid metabolic process / response to UV-B ...response to non-ionic osmotic stress / response to lipid hydroperoxide / chlorophyll metabolic process / pyridoxal 5'-phosphate synthase (glutamine hydrolysing) / pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity / pyridoxal phosphate biosynthetic process / hyperosmotic salinity response / pyridoxine biosynthetic process / amino acid metabolic process / response to UV-B / endomembrane system / response to salt stress / response to oxidative stress / protein heterodimerization activity / protein homodimerization activity / plasma membrane / cytosolSimilarity search - Function Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ / PdxS/SNZ N-terminal domain / SOR/SNZ family / PdxS/SNZ family signature. / PdxS/SNZ family profile. / Ribulose-phosphate binding barrel / Aldolase class I / Aldolase-type TIM barrel / TIM Barrel / Alpha-Beta Barrel / Alpha BetaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_plant.gif) Arabidopsis thaliana (thale cress) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / FOURIER SYNTHESIS / Resolution: 2.24 Å |
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Authors | Rodrigues, M.J. / Windeisen, V. / Zhang, Y. / Guedez, G. / Weber, S. / Strohmeier, M. / Hanes, J.W. / Royant, A. / Evans, G. / Sinning, I. ...Rodrigues, M.J. / Windeisen, V. / Zhang, Y. / Guedez, G. / Weber, S. / Strohmeier, M. / Hanes, J.W. / Royant, A. / Evans, G. / Sinning, I. / Ealick, S.E. / Begley, T.P. / Tews, I. |
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Funding support | United Kingdom, 1items Organization | Grant number | Country |
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Diamond Light Source | Funding for PhD of M. Rodrigues | United Kingdom |
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Citation | Journal: Nat. Chem. Biol. / Year: 2017 Title: Lysine relay mechanism coordinates intermediate transfer in vitamin B6 biosynthesis. Authors: Rodrigues, M.J. / Windeisen, V. / Zhang, Y. / Guedez, G. / Weber, S. / Strohmeier, M. / Hanes, J.W. / Royant, A. / Evans, G. / Sinning, I. / Ealick, S.E. / Begley, T.P. / Tews, I. |
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History | Deposition | Aug 6, 2016 | Deposition site: PDBE / Processing site: PDBE |
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Revision 1.0 | Jan 18, 2017 | Provider: repository / Type: Initial release |
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Revision 1.1 | Jan 25, 2017 | Group: Database references |
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Revision 1.2 | Feb 22, 2017 | Group: Database references |
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Revision 1.3 | Sep 19, 2018 | Group: Data collection / Database references Category: citation_author / diffrn ...citation_author / diffrn / diffrn_detector / diffrn_radiation / diffrn_radiation_wavelength / diffrn_source Item: _citation_author.identifier_ORCID |
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