- PDB-5lax: Crystal structure of HLA_DRB1*04:01 in complex with alpha-enolase... -
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基本情報
登録情報
データベース: PDB / ID: 5lax
タイトル
Crystal structure of HLA_DRB1*04:01 in complex with alpha-enolase peptide 26-40
要素
HLA class II histocompatibility antigen, DR alpha chain
HLA class II histocompatibility antigen, DRB1-4 beta chain
alpha-enolase peptideTSKGLFRAAVPSGAS
キーワード
IMMUNE SYSTEM / HLA / autoimmune desease / rheumathoid arthritis / MHC class II
機能・相同性
機能・相同性情報
Manipulation of host energy metabolism / positive regulation of plasminogen activation / negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway / regulation of interleukin-4 production / phosphopyruvate hydratase / phosphopyruvate hydratase complex / phosphopyruvate hydratase activity / regulation of interleukin-10 production / myeloid dendritic cell antigen processing and presentation / antigen processing and presentation of endogenous peptide antigen via MHC class II ...Manipulation of host energy metabolism / positive regulation of plasminogen activation / negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway / regulation of interleukin-4 production / phosphopyruvate hydratase / phosphopyruvate hydratase complex / phosphopyruvate hydratase activity / regulation of interleukin-10 production / myeloid dendritic cell antigen processing and presentation / antigen processing and presentation of endogenous peptide antigen via MHC class II / autolysosome membrane / regulation of T-helper cell differentiation / positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation / MHC class II receptor activity / positive regulation of muscle contraction / positive regulation of CD4-positive, alpha-beta T cell activation / antigen processing and presentation of peptide or polysaccharide antigen via MHC class II / positive regulation of T cell mediated immune response to tumor cell / positive regulation of kinase activity / positive regulation of memory T cell differentiation / positive regulation of monocyte differentiation / Gluconeogenesis / inflammatory response to antigenic stimulus / CD4 receptor binding / canonical glycolysis / Glycolysis / M band / intermediate filament / T-helper 1 type immune response / transport vesicle membrane / Translocation of ZAP-70 to Immunological synapse / Phosphorylation of CD3 and TCR zeta chains / nuclear outer membrane / positive regulation of ATP biosynthetic process / polysaccharide binding / negative regulation of type II interferon production / humoral immune response / Generation of second messenger molecules / macrophage differentiation / immunological synapse / Co-inhibition by PD-1 / epidermis development / positive regulation of insulin secretion involved in cellular response to glucose stimulus / detection of bacterium / T cell receptor binding / negative regulation of T cell proliferation / MHC class II antigen presentation / trans-Golgi network membrane / transcription corepressor binding / gluconeogenesis / glycolytic process / lumenal side of endoplasmic reticulum membrane / RNA polymerase II transcription regulatory region sequence-specific DNA binding / protein tetramerization / peptide antigen assembly with MHC class II protein complex / negative regulation of inflammatory response to antigenic stimulus / MHC class II protein complex / clathrin-coated endocytic vesicle membrane / ER to Golgi transport vesicle membrane / negative regulation of cell growth / antigen processing and presentation of exogenous peptide antigen via MHC class II / positive regulation of immune response / positive regulation of T cell activation / peptide antigen binding / structural constituent of cytoskeleton / positive regulation of T cell mediated cytotoxicity / response to virus / DNA-binding transcription repressor activity, RNA polymerase II-specific / cognition / endocytic vesicle membrane / positive regulation of protein phosphorylation / Interferon gamma signaling / MHC class II protein complex binding / Downstream TCR signaling / late endosome membrane / transcription corepressor activity / T cell receptor signaling pathway / GTPase binding / cell cortex / early endosome membrane / adaptive immune response / positive regulation of viral entry into host cell / lysosome / positive regulation of ERK1 and ERK2 cascade / positive regulation of canonical NF-kappaB signal transduction / positive regulation of MAPK cascade / immune response / cadherin binding / Golgi membrane / lysosomal membrane / external side of plasma membrane / negative regulation of DNA-templated transcription / positive regulation of DNA-templated transcription / magnesium ion binding / cell surface / negative regulation of transcription by RNA polymerase II / signal transduction / protein homodimerization activity / extracellular space / RNA binding 類似検索 - 分子機能
Enolase / Enolase, conserved site / Enolase, C-terminal TIM barrel domain / Enolase, N-terminal / Enolase, C-terminal TIM barrel domain / Enolase, N-terminal domain / Enolase signature. / Enolase, C-terminal TIM barrel domain / Enolase, N-terminal domain / Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 ...Enolase / Enolase, conserved site / Enolase, C-terminal TIM barrel domain / Enolase, N-terminal / Enolase, C-terminal TIM barrel domain / Enolase, N-terminal domain / Enolase signature. / Enolase, C-terminal TIM barrel domain / Enolase, N-terminal domain / Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 / Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 / MHC class II, beta chain, N-terminal / Class II histocompatibility antigen, beta domain / Class II histocompatibility antigen, beta domain / MHC class II, alpha chain, N-terminal / Class II histocompatibility antigen, alpha domain / Class II histocompatibility antigen, alpha domain / MHC class II, alpha/beta chain, N-terminal / Enolase-like, N-terminal / Enolase-like, C-terminal domain superfamily / MHC classes I/II-like antigen recognition protein / : / Immunoglobulin/major histocompatibility complex, conserved site / Immunoglobulins and major histocompatibility complex proteins signature. / Immunoglobulin C-Type / Immunoglobulin C1-set / Immunoglobulin C1-set domain / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Roll / Immunoglobulin-like fold / Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta / Alpha Beta 類似検索 - ドメイン・相同性
MALONIC ACID / HLA class II histocompatibility antigen, DR alpha chain / HLA class II histocompatibility antigen, DRB1 beta chain / Alpha-enolase / HLA class II histocompatibility antigen, DRB1 beta chain 類似検索 - 構成要素
A: HLA class II histocompatibility antigen, DR alpha chain B: HLA class II histocompatibility antigen, DRB1-4 beta chain C: HLA class II histocompatibility antigen, DR alpha chain D: HLA class II histocompatibility antigen, DRB1-4 beta chain E: alpha-enolase peptideTSKGLFRAAVPSGAS F: alpha-enolase peptideTSKGLFRAAVPSGAS ヘテロ分子
A: HLA class II histocompatibility antigen, DR alpha chain B: HLA class II histocompatibility antigen, DRB1-4 beta chain E: alpha-enolase peptideTSKGLFRAAVPSGAS
C: HLA class II histocompatibility antigen, DR alpha chain D: HLA class II histocompatibility antigen, DRB1-4 beta chain F: alpha-enolase peptideTSKGLFRAAVPSGAS ヘテロ分子
解像度: 2.6→47.56 Å / Cor.coef. Fo:Fc: 0.944 / Cor.coef. Fo:Fc free: 0.877 / SU B: 31.692 / SU ML: 0.341 / 交差検証法: THROUGHOUT / ESU R Free: 0.389 / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS