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- PDB-5ikn: Crystal Structure of the T7 Replisome in the Absence of DNA -

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基本情報

登録情報
データベース: PDB / ID: 5ikn
タイトルCrystal Structure of the T7 Replisome in the Absence of DNA
要素
  • DNA primase/helicase
  • DNA-directed DNA polymerase
  • Thioredoxin-1
キーワードTRANSFERASE / Replisome
機能・相同性
機能・相同性情報


DNA synthesis involved in DNA replication / DNA exonuclease activity / DNA replication, synthesis of primer / viral DNA genome replication / 加水分解酵素; エステル加水分解酵素; 5'-リン酸モノエステル産生エンドデオキシリボヌクレアーゼ / protein-disulfide reductase activity / 3'-5' exonuclease activity / DNA helicase activity / cell redox homeostasis / DNA-templated DNA replication ...DNA synthesis involved in DNA replication / DNA exonuclease activity / DNA replication, synthesis of primer / viral DNA genome replication / 加水分解酵素; エステル加水分解酵素; 5'-リン酸モノエステル産生エンドデオキシリボヌクレアーゼ / protein-disulfide reductase activity / 3'-5' exonuclease activity / DNA helicase activity / cell redox homeostasis / DNA-templated DNA replication / 転移酵素; リンを含む基を移すもの; 核酸を移すもの / DNA-directed RNA polymerase activity / double-strand break repair / single-stranded DNA binding / 5'-3' DNA helicase activity / DNA helicase / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / nucleotide binding / ATP hydrolysis activity / DNA binding / zinc ion binding / ATP binding / metal ion binding / identical protein binding / cytosol
類似検索 - 分子機能
Bacteriophage T7 DNA helicase/primase / : / Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold / Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal / Zinc-binding domain of primase-helicase / Zinc-binding domain of primase-helicase / DNA-directed DNA polymerase T7 / Twinkle-like protein / Archaeal primase DnaG/twinkle-like, TOPRIM domain / Toprim-like ...Bacteriophage T7 DNA helicase/primase / : / Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold / Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal / Zinc-binding domain of primase-helicase / Zinc-binding domain of primase-helicase / DNA-directed DNA polymerase T7 / Twinkle-like protein / Archaeal primase DnaG/twinkle-like, TOPRIM domain / Toprim-like / DnaB-like helicase C terminal domain / DNA helicase, DnaB-like, C-terminal / Superfamily 4 helicase domain profile. / TOPRIM / Thioredoxin / DNA polymerase A / DNA polymerase family A / DNA-directed DNA polymerase, family A, conserved site / DNA polymerase family A signature. / DNA-directed DNA polymerase, family A, palm domain / DNA polymerase A domain / Toprim domain profile. / TOPRIM domain / Thioredoxin / Thioredoxin, conserved site / Thioredoxin family active site. / Thioredoxin domain profile. / Thioredoxin domain / Thioredoxin-like superfamily / Ribonuclease H superfamily / Ribonuclease H-like superfamily / DNA/RNA polymerase superfamily / P-loop containing nucleoside triphosphate hydrolase
類似検索 - ドメイン・相同性
DNA-directed DNA polymerase / DNA helicase/primase / Thioredoxin 1
類似検索 - 構成要素
生物種Enterobacteria phage T7 (ファージ)
Escherichia coli O157:H7 (大腸菌)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 4.802 Å
データ登録者Wallen, J.R. / Ellenberger, T.
資金援助 米国, 1件
組織認可番号国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM055390 米国
引用ジャーナル: Structure / 年: 2017
タイトル: Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.
著者: Wallen, J.R. / Zhang, H. / Weis, C. / Cui, W. / Foster, B.M. / Ho, C.M. / Hammel, M. / Tainer, J.A. / Gross, M.L. / Ellenberger, T.
履歴
登録2016年3月3日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02016年12月7日Provider: repository / タイプ: Initial release
改定 1.12017年1月18日Group: Database references
改定 1.22017年9月20日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.32019年12月25日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.42023年9月27日Group: Data collection / Database references / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
A: DNA-directed DNA polymerase
B: DNA-directed DNA polymerase
C: DNA-directed DNA polymerase
D: DNA primase/helicase
E: DNA primase/helicase
F: DNA primase/helicase
G: DNA primase/helicase
H: DNA primase/helicase
I: DNA primase/helicase
J: DNA primase/helicase
K: Thioredoxin-1
L: Thioredoxin-1
M: Thioredoxin-1


分子量 (理論値)分子数
合計 (水以外)650,05813
ポリマ－650,05813
非ポリマー00
水00
1


  • 登録構造と同一
  • 登録者が定義した集合体
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area35930 Å2
ΔGint-86 kcal/mol
Surface area239180 Å2
単位格子
Length a, b, c (Å)174.866, 238.091, 243.466
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number19
Space group name H-MP212121
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11(chain K and (resseq 3:7 or resseq 9:18 or resseq...
21(chain L and (resseq 3:7 or resseq 9:18 or resseq...
31(chain M and (resseq 3:7 or resseq 9:18 or resseq...
12(chain A and (resseq 202:261 or resseq 339:349 or resseq...
22(chain B and (resseq 202:261 or resseq 339:349 or resseq...
32(chain C and (resseq 202:261 or resseq 339:349 or resseq...
13(chain D and (resseq 272:281 or resseq 294:300 or resseq...
23(chain E and (resseq 272:281 or resseq 294:300 or resseq...
33(chain F and (resseq 272:281 or resseq 294:300 or resseq...
43(chain G and (resseq 272:281 or resseq 294:300 or resseq...
53(chain H and (resseq 272:281 or resseq 294:300 or resseq...
63(chain I and (resseq 272:281 or resseq 294:300 or resseq...
73(chain J and (resseq 272:281 or resseq 294:300 or resseq...
14(chain D and (resseq 74:78 or resseq 80:82 or resseq...
24(chain E and (resseq 74:78 or resseq 80:82 or resseq...
34(chain F and (resseq 74:78 or resseq 80:82 or resseq...
44(chain G and (resseq 74:78 or resseq 80:82 or resseq...
54(chain H and (resseq 74:78 or resseq 80:82 or resseq...
64(chain I and (resseq 74:78 or resseq 80:82 or resseq...
74(chain J and (resseq 74:78 or resseq 80:82 or resseq...
15(chain A and (resseq 447:454 or resseq 470:477 or resseq...
25(chain B and (resseq 447:454 or resseq 470:477 or resseq...
35(chain C and (resseq 447:454 or resseq 470:477 or resseq...
16(chain A and (resseq 1:9 or resseq 17:26 or resseq...
26(chain B and (resseq 1:9 or resseq 17:26 or resseq...
36(chain C and (resseq 1:9 or resseq 17:26 or resseq...
17(chain A and (resseq 478:514 or resseq 517:530 or resseq...
27(chain B and (resseq 478:514 or resseq 517:530 or resseq...
37(chain C and (resseq 478:514 or resseq 517:530 or resseq...

NCSドメイン領域:
Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
111LYSLYSLEULEU(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK3 - 71 - 5
121ASPASPLYSLYS(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK9 - 187 - 16
131ALAALAALAALA(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK22 - 2920 - 27
141GLYGLYGLUGLU(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK33 - 4831 - 46
151THRTHRILEILE(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK54 - 6052 - 58
161PROPROLYSLYS(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK64 - 6962 - 67
171PROPROASNASN(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK76 - 8374 - 81
181GLUGLUGLYGLY(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK85 - 9283 - 90
191LYSLYSLEULEU(chain K and (resseq 3:7 or resseq 9:18 or resseq...KK96 - 10794 - 105
211LYSLYSLEULEU(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL3 - 71 - 5
221ASPASPLYSLYS(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL9 - 187 - 16
231ALAALAALAALA(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL22 - 2920 - 27
241GLYGLYGLUGLU(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL33 - 4831 - 46
251THRTHRILEILE(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL54 - 6052 - 58
261PROPROLYSLYS(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL64 - 6962 - 67
271PROPROASNASN(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL76 - 8374 - 81
281GLUGLUGLYGLY(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL85 - 9283 - 90
291LYSLYSLEULEU(chain L and (resseq 3:7 or resseq 9:18 or resseq...LL96 - 10794 - 105
311LYSLYSLEULEU(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM3 - 71 - 5
321ASPASPLYSLYS(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM9 - 187 - 16
331ALAALAALAALA(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM22 - 2920 - 27
341GLYGLYGLUGLU(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM33 - 4831 - 46
351THRTHRILEILE(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM54 - 6052 - 58
361PROPROLYSLYS(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM64 - 6962 - 67
371PROPROASNASN(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM76 - 8374 - 81
381GLUGLUGLYGLY(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM85 - 9283 - 90
391LYSLYSLEULEU(chain M and (resseq 3:7 or resseq 9:18 or resseq...MM96 - 10794 - 105
112GLYGLYPHEPHE(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA202 - 261202 - 261
122ARGARGALAALA(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA339 - 349339 - 349
132LYSLYSTHRTHR(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA355 - 357355 - 357
142ALAALAVALVAL(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA361 - 363361 - 363
152ASPASPVALVAL(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA365 - 372365 - 372
162ASPASPALAALA(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA376 - 400376 - 400
172ALAALAVALVAL(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA405 - 410405 - 410
182GLYGLYASNASN(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA414 - 421414 - 421
192ALAALAALAALA(chain A and (resseq 202:261 or resseq 339:349 or resseq...AA430 - 433430 - 433
212GLYGLYPHEPHE(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB202 - 261202 - 261
222ARGARGALAALA(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB339 - 349339 - 349
232LYSLYSTHRTHR(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB355 - 357355 - 357
242ALAALAVALVAL(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB361 - 363361 - 363
252ASPASPVALVAL(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB365 - 372365 - 372
262ASPASPALAALA(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB376 - 400376 - 400
272ALAALAVALVAL(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB405 - 410405 - 410
282GLYGLYASNASN(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB414 - 421414 - 421
292ALAALAALAALA(chain B and (resseq 202:261 or resseq 339:349 or resseq...BB430 - 433430 - 433
312GLYGLYPHEPHE(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC202 - 261202 - 261
322ARGARGALAALA(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC339 - 349339 - 349
332LYSLYSTHRTHR(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC355 - 357355 - 357
342ALAALAVALVAL(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC361 - 363361 - 363
352ASPASPVALVAL(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC365 - 372365 - 372
362ASPASPALAALA(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC376 - 400376 - 400
372ALAALAVALVAL(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC405 - 410405 - 410
382GLYGLYASNASN(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC414 - 421414 - 421
392ALAALAALAALA(chain C and (resseq 202:261 or resseq 339:349 or resseq...CC430 - 433430 - 433
113ARGARGSERSER(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD272 - 281209 - 218
123GLYGLYLEULEU(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD294 - 300231 - 237
133VALVALSERSER(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD307 - 312244 - 249
143LYSLYSGLYGLY(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD318 - 334255 - 271
153LYSLYSMETMET(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD336 - 341273 - 278
163VALVALASNASN(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD346 - 358283 - 295
173ASPASPGLUGLU(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD366 - 374303 - 311
183PHEPHEGLYGLY(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD378 - 387315 - 324
193PHEPHETYRTYR(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD391 - 394328 - 331
1103THRTHRGLYGLY(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD402 - 417339 - 354
1113VALVALILEILE(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD420 - 426357 - 363
1123GLUGLUGLYGLY(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD438 - 457375 - 394
1133VALVALCYSCYS(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD459 - 464396 - 401
1143ILEILELEULEU(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD483 - 486420 - 423
1153GLYGLYLEULEU(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD490 - 495427 - 432
1163THRTHRARGARG(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD498 - 504435 - 441
1173LEULEUCYSCYS(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD513 - 521450 - 458
1183GLYGLYASNASN(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD525 - 536462 - 473
1193TRPTRPTRPTRP(chain D and (resseq 272:281 or resseq 294:300 or resseq...DD541478
213ARGARGSERSER(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE272 - 281209 - 218
223GLYGLYLEULEU(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE294 - 300231 - 237
233VALVALSERSER(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE307 - 312244 - 249
243LYSLYSGLYGLY(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE318 - 334255 - 271
253LYSLYSMETMET(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE336 - 341273 - 278
263VALVALASNASN(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE346 - 358283 - 295
273ASPASPGLUGLU(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE366 - 374303 - 311
283PHEPHEGLYGLY(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE378 - 387315 - 324
293PHEPHETYRTYR(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE391 - 394328 - 331
2103THRTHRGLYGLY(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE402 - 417339 - 354
2113VALVALILEILE(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE420 - 426357 - 363
2123GLUGLUGLYGLY(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE438 - 457375 - 394
2133VALVALCYSCYS(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE459 - 464396 - 401
2143ILEILELEULEU(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE483 - 486420 - 423
2153GLYGLYLEULEU(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE490 - 495427 - 432
2163THRTHRARGARG(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE498 - 504435 - 441
2173LEULEUCYSCYS(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE513 - 521450 - 458
2183GLYGLYASNASN(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE525 - 536462 - 473
2193TRPTRPTRPTRP(chain E and (resseq 272:281 or resseq 294:300 or resseq...EE541478
313ARGARGSERSER(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF272 - 281209 - 218
323GLYGLYLEULEU(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF294 - 300231 - 237
333VALVALSERSER(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF307 - 312244 - 249
343LYSLYSGLYGLY(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF318 - 334255 - 271
353LYSLYSMETMET(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF336 - 341273 - 278
363VALVALASNASN(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF346 - 358283 - 295
373ASPASPGLUGLU(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF366 - 374303 - 311
383PHEPHEGLYGLY(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF378 - 387315 - 324
393PHEPHETYRTYR(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF391 - 394328 - 331
3103THRTHRGLYGLY(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF402 - 417339 - 354
3113VALVALILEILE(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF420 - 426357 - 363
3123GLUGLUGLYGLY(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF438 - 457375 - 394
3133VALVALCYSCYS(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF459 - 464396 - 401
3143ILEILELEULEU(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF483 - 486420 - 423
3153GLYGLYLEULEU(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF490 - 495427 - 432
3163THRTHRARGARG(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF498 - 504435 - 441
3173LEULEUCYSCYS(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF513 - 521450 - 458
3183GLYGLYASNASN(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF525 - 536462 - 473
3193TRPTRPTRPTRP(chain F and (resseq 272:281 or resseq 294:300 or resseq...FF541478
413ARGARGSERSER(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG272 - 281209 - 218
423GLYGLYLEULEU(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG294 - 300231 - 237
433VALVALSERSER(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG307 - 312244 - 249
443LYSLYSGLYGLY(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG318 - 334255 - 271
453LYSLYSMETMET(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG336 - 341273 - 278
463VALVALASNASN(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG346 - 358283 - 295
473ASPASPGLUGLU(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG366 - 374303 - 311
483PHEPHEGLYGLY(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG378 - 387315 - 324
493PHEPHETYRTYR(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG391 - 394328 - 331
4103THRTHRGLYGLY(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG402 - 417339 - 354
4113VALVALILEILE(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG420 - 426357 - 363
4123GLUGLUGLYGLY(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG438 - 457375 - 394
4133VALVALCYSCYS(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG459 - 464396 - 401
4143ILEILELEULEU(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG483 - 486420 - 423
4153GLYGLYLEULEU(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG490 - 495427 - 432
4163THRTHRARGARG(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG498 - 504435 - 441
4173LEULEUCYSCYS(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG513 - 521450 - 458
4183GLYGLYASNASN(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG525 - 536462 - 473
4193TRPTRPTRPTRP(chain G and (resseq 272:281 or resseq 294:300 or resseq...GG541478
513ARGARGSERSER(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH272 - 281209 - 218
523GLYGLYLEULEU(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH294 - 300231 - 237
533VALVALSERSER(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH307 - 312244 - 249
543LYSLYSGLYGLY(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH318 - 334255 - 271
553LYSLYSMETMET(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH336 - 341273 - 278
563VALVALASNASN(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH346 - 358283 - 295
573ASPASPGLUGLU(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH366 - 374303 - 311
583PHEPHEGLYGLY(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH378 - 387315 - 324
593PHEPHETYRTYR(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH391 - 394328 - 331
5103THRTHRGLYGLY(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH402 - 417339 - 354
5113VALVALILEILE(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH420 - 426357 - 363
5123GLUGLUGLYGLY(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH438 - 457375 - 394
5133VALVALCYSCYS(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH459 - 464396 - 401
5143ILEILELEULEU(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH483 - 486420 - 423
5153GLYGLYLEULEU(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH490 - 495427 - 432
5163THRTHRARGARG(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH498 - 504435 - 441
5173LEULEUCYSCYS(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH513 - 521450 - 458
5183GLYGLYASNASN(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH525 - 536462 - 473
5193TRPTRPTRPTRP(chain H and (resseq 272:281 or resseq 294:300 or resseq...HH541478
613ARGARGSERSER(chain I and (resseq 272:281 or resseq 294:300 or resseq...II272 - 281209 - 218
623GLYGLYLEULEU(chain I and (resseq 272:281 or resseq 294:300 or resseq...II294 - 300231 - 237
633VALVALSERSER(chain I and (resseq 272:281 or resseq 294:300 or resseq...II307 - 312244 - 249
643LYSLYSGLYGLY(chain I and (resseq 272:281 or resseq 294:300 or resseq...II318 - 334255 - 271
653LYSLYSMETMET(chain I and (resseq 272:281 or resseq 294:300 or resseq...II336 - 341273 - 278
663VALVALASNASN(chain I and (resseq 272:281 or resseq 294:300 or resseq...II346 - 358283 - 295
673ASPASPGLUGLU(chain I and (resseq 272:281 or resseq 294:300 or resseq...II366 - 374303 - 311
683PHEPHEGLYGLY(chain I and (resseq 272:281 or resseq 294:300 or resseq...II378 - 387315 - 324
693PHEPHETYRTYR(chain I and (resseq 272:281 or resseq 294:300 or resseq...II391 - 394328 - 331
6103THRTHRGLYGLY(chain I and (resseq 272:281 or resseq 294:300 or resseq...II402 - 417339 - 354
6113VALVALILEILE(chain I and (resseq 272:281 or resseq 294:300 or resseq...II420 - 426357 - 363
6123GLUGLUGLYGLY(chain I and (resseq 272:281 or resseq 294:300 or resseq...II438 - 457375 - 394
6133VALVALCYSCYS(chain I and (resseq 272:281 or resseq 294:300 or resseq...II459 - 464396 - 401
6143ILEILELEULEU(chain I and (resseq 272:281 or resseq 294:300 or resseq...II483 - 486420 - 423
6153GLYGLYLEULEU(chain I and (resseq 272:281 or resseq 294:300 or resseq...II490 - 495427 - 432
6163THRTHRARGARG(chain I and (resseq 272:281 or resseq 294:300 or resseq...II498 - 504435 - 441
6173LEULEUCYSCYS(chain I and (resseq 272:281 or resseq 294:300 or resseq...II513 - 521450 - 458
6183GLYGLYASNASN(chain I and (resseq 272:281 or resseq 294:300 or resseq...II525 - 536462 - 473
6193TRPTRPTRPTRP(chain I and (resseq 272:281 or resseq 294:300 or resseq...II541478
713ARGARGSERSER(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ272 - 281209 - 218
723GLYGLYLEULEU(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ294 - 300231 - 237
733VALVALSERSER(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ307 - 312244 - 249
743LYSLYSGLYGLY(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ318 - 334255 - 271
753LYSLYSMETMET(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ336 - 341273 - 278
763VALVALASNASN(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ346 - 358283 - 295
773ASPASPGLUGLU(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ366 - 374303 - 311
783PHEPHEGLYGLY(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ378 - 387315 - 324
793PHEPHETYRTYR(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ391 - 394328 - 331
7103THRTHRGLYGLY(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ402 - 417339 - 354
7113VALVALILEILE(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ420 - 426357 - 363
7123GLUGLUGLYGLY(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ438 - 457375 - 394
7133VALVALCYSCYS(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ459 - 464396 - 401
7143ILEILELEULEU(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ483 - 486420 - 423
7153GLYGLYLEULEU(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ490 - 495427 - 432
7163THRTHRARGARG(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ498 - 504435 - 441
7173LEULEUCYSCYS(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ513 - 521450 - 458
7183GLYGLYASNASN(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ525 - 536462 - 473
7193TRPTRPTRPTRP(chain J and (resseq 272:281 or resseq 294:300 or resseq...JJ541478
114SERSERTYRTYR(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD74 - 7811 - 15
124ALAALATHRTHR(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD80 - 8217 - 19
134ILEILEVALVAL(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD86 - 10123 - 38
144METMETASPASP(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD105 - 11342 - 50
154GLYGLYASPASP(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD116 - 12553 - 62
164LYSLYSSERSER(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD128 - 13565 - 72
174ALAALATRPTRP(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD140 - 14777 - 84
184LYSLYSTHRTHR(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD152 - 15689 - 93
194GLUGLULYSLYS(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD159 - 17296 - 109
1104VALVALGLYGLY(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD175 - 179112 - 116
1114SERSERGLNGLN(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD183 - 198120 - 135
1124GLNGLNMETMET(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD201 - 205138 - 142
1134GLUGLULEULEU(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD210 - 223147 - 160
1144LYSLYSALAALA(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD227 - 231164 - 168
1154ALAALAASNASN(chain D and (resseq 74:78 or resseq 80:82 or resseq...DD238 - 256175 - 193
214SERSERTYRTYR(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE74 - 7811 - 15
224ALAALATHRTHR(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE80 - 8217 - 19
234ILEILEVALVAL(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE86 - 10123 - 38
244METMETASPASP(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE105 - 11342 - 50
254GLYGLYASPASP(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE116 - 12553 - 62
264LYSLYSSERSER(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE128 - 13565 - 72
274ALAALATRPTRP(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE140 - 14777 - 84
284LYSLYSTHRTHR(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE152 - 15689 - 93
294GLUGLULYSLYS(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE159 - 17296 - 109
2104VALVALGLYGLY(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE175 - 179112 - 116
2114SERSERGLNGLN(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE183 - 198120 - 135
2124GLNGLNMETMET(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE201 - 205138 - 142
2134GLUGLULEULEU(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE210 - 223147 - 160
2144LYSLYSALAALA(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE227 - 231164 - 168
2154ALAALAASNASN(chain E and (resseq 74:78 or resseq 80:82 or resseq...EE238 - 256175 - 193
314SERSERTYRTYR(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF74 - 7811 - 15
324ALAALATHRTHR(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF80 - 8217 - 19
334ILEILEVALVAL(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF86 - 10123 - 38
344METMETASPASP(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF105 - 11342 - 50
354GLYGLYASPASP(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF116 - 12553 - 62
364LYSLYSSERSER(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF128 - 13565 - 72
374ALAALATRPTRP(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF140 - 14777 - 84
384LYSLYSTHRTHR(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF152 - 15689 - 93
394GLUGLULYSLYS(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF159 - 17296 - 109
3104VALVALGLYGLY(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF175 - 179112 - 116
3114SERSERGLNGLN(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF183 - 198120 - 135
3124GLNGLNMETMET(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF201 - 205138 - 142
3134GLUGLULEULEU(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF210 - 223147 - 160
3144LYSLYSALAALA(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF227 - 231164 - 168
3154ALAALAASNASN(chain F and (resseq 74:78 or resseq 80:82 or resseq...FF238 - 256175 - 193
414SERSERTYRTYR(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG74 - 7811 - 15
424ALAALATHRTHR(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG80 - 8217 - 19
434ILEILEVALVAL(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG86 - 10123 - 38
444METMETASPASP(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG105 - 11342 - 50
454GLYGLYASPASP(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG116 - 12553 - 62
464LYSLYSSERSER(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG128 - 13565 - 72
474ALAALATRPTRP(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG140 - 14777 - 84
484LYSLYSTHRTHR(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG152 - 15689 - 93
494GLUGLULYSLYS(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG159 - 17296 - 109
4104VALVALGLYGLY(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG175 - 179112 - 116
4114SERSERGLNGLN(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG183 - 198120 - 135
4124GLNGLNMETMET(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG201 - 205138 - 142
4134GLUGLULEULEU(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG210 - 223147 - 160
4144LYSLYSALAALA(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG227 - 231164 - 168
4154ALAALAASNASN(chain G and (resseq 74:78 or resseq 80:82 or resseq...GG238 - 256175 - 193
514SERSERTYRTYR(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH74 - 7811 - 15
524ALAALATHRTHR(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH80 - 8217 - 19
534ILEILEVALVAL(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH86 - 10123 - 38
544METMETASPASP(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH105 - 11342 - 50
554GLYGLYASPASP(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH116 - 12553 - 62
564LYSLYSSERSER(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH128 - 13565 - 72
574ALAALATRPTRP(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH140 - 14777 - 84
584LYSLYSTHRTHR(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH152 - 15689 - 93
594GLUGLULYSLYS(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH159 - 17296 - 109
5104VALVALGLYGLY(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH175 - 179112 - 116
5114SERSERGLNGLN(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH183 - 198120 - 135
5124GLNGLNMETMET(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH201 - 205138 - 142
5134GLUGLULEULEU(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH210 - 223147 - 160
5144LYSLYSALAALA(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH227 - 231164 - 168
5154ALAALAASNASN(chain H and (resseq 74:78 or resseq 80:82 or resseq...HH238 - 256175 - 193
614SERSERTYRTYR(chain I and (resseq 74:78 or resseq 80:82 or resseq...II74 - 7811 - 15
624ALAALATHRTHR(chain I and (resseq 74:78 or resseq 80:82 or resseq...II80 - 8217 - 19
634ILEILEVALVAL(chain I and (resseq 74:78 or resseq 80:82 or resseq...II86 - 10123 - 38
644METMETASPASP(chain I and (resseq 74:78 or resseq 80:82 or resseq...II105 - 11342 - 50
654GLYGLYASPASP(chain I and (resseq 74:78 or resseq 80:82 or resseq...II116 - 12553 - 62
664LYSLYSSERSER(chain I and (resseq 74:78 or resseq 80:82 or resseq...II128 - 13565 - 72
674ALAALATRPTRP(chain I and (resseq 74:78 or resseq 80:82 or resseq...II140 - 14777 - 84
684LYSLYSTHRTHR(chain I and (resseq 74:78 or resseq 80:82 or resseq...II152 - 15689 - 93
694GLUGLULYSLYS(chain I and (resseq 74:78 or resseq 80:82 or resseq...II159 - 17296 - 109
6104VALVALGLYGLY(chain I and (resseq 74:78 or resseq 80:82 or resseq...II175 - 179112 - 116
6114SERSERGLNGLN(chain I and (resseq 74:78 or resseq 80:82 or resseq...II183 - 198120 - 135
6124GLNGLNMETMET(chain I and (resseq 74:78 or resseq 80:82 or resseq...II201 - 205138 - 142
6134GLUGLULEULEU(chain I and (resseq 74:78 or resseq 80:82 or resseq...II210 - 223147 - 160
6144LYSLYSALAALA(chain I and (resseq 74:78 or resseq 80:82 or resseq...II227 - 231164 - 168
6154ALAALAASNASN(chain I and (resseq 74:78 or resseq 80:82 or resseq...II238 - 256175 - 193
714SERSERTYRTYR(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ74 - 7811 - 15
724ALAALATHRTHR(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ80 - 8217 - 19
734ILEILEVALVAL(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ86 - 10123 - 38
744METMETASPASP(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ105 - 11342 - 50
754GLYGLYASPASP(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ116 - 12553 - 62
764LYSLYSSERSER(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ128 - 13565 - 72
774ALAALATRPTRP(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ140 - 14777 - 84
784LYSLYSTHRTHR(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ152 - 15689 - 93
794GLUGLULYSLYS(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ159 - 17296 - 109
7104VALVALGLYGLY(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ175 - 179112 - 116
7114SERSERGLNGLN(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ183 - 198120 - 135
7124GLNGLNMETMET(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ201 - 205138 - 142
7134GLUGLULEULEU(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ210 - 223147 - 160
7144LYSLYSALAALA(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ227 - 231164 - 168
7154ALAALAASNASN(chain J and (resseq 74:78 or resseq 80:82 or resseq...JJ238 - 256175 - 193
115TYRTYRALAALA(chain A and (resseq 447:454 or resseq 470:477 or resseq...AA447 - 454447 - 454
125VALVALSERSER(chain A and (resseq 447:454 or resseq 470:477 or resseq...AA470 - 477470 - 477
135ASPASPVALVAL(chain A and (resseq 447:454 or resseq 470:477 or resseq...AA645 - 652645 - 652
145ASPASPASNASN(chain A and (resseq 447:454 or resseq 470:477 or resseq...AA654 - 685654 - 685
155ASPASPPROPRO(chain A and (resseq 447:454 or resseq 470:477 or resseq...AA691 - 698691 - 698
215TYRTYRALAALA(chain B and (resseq 447:454 or resseq 470:477 or resseq...BB447 - 454447 - 454
225VALVALSERSER(chain B and (resseq 447:454 or resseq 470:477 or resseq...BB470 - 477470 - 477
235ASPASPVALVAL(chain B and (resseq 447:454 or resseq 470:477 or resseq...BB645 - 652645 - 652
245ASPASPASNASN(chain B and (resseq 447:454 or resseq 470:477 or resseq...BB654 - 685654 - 685
255ASPASPPROPRO(chain B and (resseq 447:454 or resseq 470:477 or resseq...BB691 - 698691 - 698
315TYRTYRALAALA(chain C and (resseq 447:454 or resseq 470:477 or resseq...CC447 - 454447 - 454
325VALVALSERSER(chain C and (resseq 447:454 or resseq 470:477 or resseq...CC470 - 477470 - 477
335ASPASPVALVAL(chain C and (resseq 447:454 or resseq 470:477 or resseq...CC645 - 652645 - 652
345ASPASPASNASN(chain C and (resseq 447:454 or resseq 470:477 or resseq...CC654 - 685654 - 685
355ASPASPPROPRO(chain C and (resseq 447:454 or resseq 470:477 or resseq...CC691 - 698691 - 698
116METMETASNASN(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA1 - 91 - 9
126LYSLYSTYRTYR(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA17 - 2617 - 26
136GLUGLUTYRTYR(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA30 - 3430 - 34
146ASPASPARGARG(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA38 - 5238 - 52
156LEULEUHISHIS(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA55 - 5955 - 59
166TYRTYRLEULEU(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA64 - 7764 - 77
176ASNASNHISHIS(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA87 - 9987 - 99
186LYSLYSSERSER(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA103 - 112103 - 112
196LEULEUARGARG(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA125 - 131125 - 131
1106LYSLYSGLUGLU(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA140 - 149140 - 149
1116ASNASNSERSER(chain A and (resseq 1:9 or resseq 17:26 or resseq...AA164 - 187164 - 187
216METMETASNASN(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB1 - 91 - 9
226LYSLYSTYRTYR(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB17 - 2617 - 26
236GLUGLUTYRTYR(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB30 - 3430 - 34
246ASPASPARGARG(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB38 - 5238 - 52
256LEULEUHISHIS(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB55 - 5955 - 59
266TYRTYRLEULEU(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB64 - 7764 - 77
276ASNASNHISHIS(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB87 - 9987 - 99
286LYSLYSSERSER(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB103 - 112103 - 112
296LEULEUARGARG(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB125 - 131125 - 131
2106LYSLYSGLUGLU(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB140 - 149140 - 149
2116ASNASNSERSER(chain B and (resseq 1:9 or resseq 17:26 or resseq...BB164 - 187164 - 187
316METMETASNASN(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC1 - 91 - 9
326LYSLYSTYRTYR(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC17 - 2617 - 26
336GLUGLUTYRTYR(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC30 - 3430 - 34
346ASPASPARGARG(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC38 - 5238 - 52
356LEULEUHISHIS(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC55 - 5955 - 59
366TYRTYRLEULEU(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC64 - 7764 - 77
376ASNASNHISHIS(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC87 - 9987 - 99
386LYSLYSSERSER(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC103 - 112103 - 112
396LEULEUARGARG(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC125 - 131125 - 131
3106LYSLYSGLUGLU(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC140 - 149140 - 149
3116ASNASNSERSER(chain C and (resseq 1:9 or resseq 17:26 or resseq...CC164 - 187164 - 187
117GLYGLYGLUGLU(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA478 - 514478 - 514
127THRTHRTYRTYR(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA517 - 530517 - 530
137GLYGLYGLYGLY(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA533 - 542533 - 542
147GLYGLYVALVAL(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA544 - 580544 - 580
157GLUGLULYSLYS(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA583 - 589583 - 589
167ARGARGGLYGLY(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA591 - 595591 - 595
177ARGARGVALVAL(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA599 - 603599 - 603
187ALAALAGLUGLU(chain A and (resseq 478:514 or resseq 517:530 or resseq...AA608 - 635608 - 635
217GLYGLYGLUGLU(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB478 - 514478 - 514
227THRTHRTYRTYR(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB517 - 530517 - 530
237GLYGLYGLYGLY(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB533 - 542533 - 542
247GLYGLYVALVAL(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB544 - 580544 - 580
257GLUGLULYSLYS(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB583 - 589583 - 589
267ARGARGGLYGLY(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB591 - 595591 - 595
277ARGARGVALVAL(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB599 - 603599 - 603
287ALAALAGLUGLU(chain B and (resseq 478:514 or resseq 517:530 or resseq...BB608 - 635608 - 635
317GLYGLYGLUGLU(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC478 - 514478 - 514
327THRTHRTYRTYR(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC517 - 530517 - 530
337GLYGLYGLYGLY(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC533 - 542533 - 542
347GLYGLYVALVAL(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC544 - 580544 - 580
357GLUGLULYSLYS(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC583 - 589583 - 589
367ARGARGGLYGLY(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC591 - 595591 - 595
377ARGARGVALVAL(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC599 - 603599 - 603
387ALAALAGLUGLU(chain C and (resseq 478:514 or resseq 517:530 or resseq...CC608 - 635608 - 635

NCSアンサンブル:
ID
1
2
3
4
5
6
7

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要素

#1: タンパク質 DNA-directed DNA polymerase / DNA polymerase gp5 / Gene product 5 / Gp5 / T7 DNA polymerase


分子量: 79703.578 Da / 分子数: 3 / 変異: D5A, E7A / 由来タイプ: 組換発現
由来: (組換発現) Enterobacteria phage T7 (ファージ)
発現宿主: Escherichia coli (大腸菌)
参照: UniProt: P00581, DNA-directed DNA polymerase, 加水分解酵素; エステル加水分解酵素; 5'-リン酸モノエステル産生エンドデオキシリボヌクレアーゼ
#2: タンパク質
DNA primase/helicase / Gene product 4 / Gp4


分子量: 53815.004 Da / 分子数: 7 / 由来タイプ: 組換発現
由来: (組換発現) Enterobacteria phage T7 (ファージ)
発現宿主: Escherichia coli (大腸菌)
参照: UniProt: P03692, 転移酵素; リンを含む基を移すもの; 核酸を移すもの, DNA helicase
#3: タンパク質 Thioredoxin-1 / Trx-1


分子量: 11414.143 Da / 分子数: 3 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli O157:H7 (大腸菌) / 遺伝子: trxA, Z5291, ECs4714 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AA27

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実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 3.9 Å3/Da / 溶媒含有率: 68.45 %
結晶化温度: 295.15 K / 手法: 蒸気拡散法, ハンギングドロップ法 / 詳細: 1.47-1.62M Sodium Formate 0.1M Tris pH 7.5

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: APS / ビームライン: 21-ID-F / 波長: 0.97872 Å
検出器タイプ: MARMOSAIC 225 mm CCD / 検出器: CCD / 日付: 2011年4月25日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.97872 Å / 相対比: 1
反射解像度: 4.8→29.983 Å / Num. obs: 41183 / % possible obs: 97.9 % / 冗長度: 3.7 % / Net I/σ(I): 10.1
反射 シェル解像度: 4.8→4.88 Å / 冗長度: 3.3 % / % possible all: 97.6

-
解析

ソフトウェア
名称バージョン分類
PHENIX1.10_2155精密化
HKL-2000データスケーリング
PDB_EXTRACT3.2データ抽出
HKL-2000データ削減
精密化構造決定の手法: 分子置換
開始モデル: 2AJQ, 1CR0, 1NUI

2ajq

1cr0

1nui


解像度: 4.802→29.983 Å / SU ML: 0.9 / 交差検証法: FREE R-VALUE / σ(F): 1.37 / 位相誤差: 37.39 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.3178 2099 5.1 %
Rwork0.2747 39084 -
obs0.2768 41183 82.21 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 466.39 Å2 / Biso mean: 240.1147 Å2 / Biso min: 130.89 Å2
精密化ステップサイクル: final / 解像度: 4.802→29.983 Å
タンパク質核酸リガンド溶媒全体
原子数43846 0 0 0 43846
残基数----5604
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.00444683
X-RAY DIFFRACTIONf_angle_d0.73660276
X-RAY DIFFRACTIONf_chiral_restr0.0446554
X-RAY DIFFRACTIONf_plane_restr0.0047816
X-RAY DIFFRACTIONf_dihedral_angle_d14.67426680
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDRmsタイプ
11K1046X-RAY DIFFRACTION14.132TORSIONAL
12L1046X-RAY DIFFRACTION14.132TORSIONAL
13M1046X-RAY DIFFRACTION14.132TORSIONAL
21A1822X-RAY DIFFRACTION14.132TORSIONAL
22B1822X-RAY DIFFRACTION14.132TORSIONAL
23C1822X-RAY DIFFRACTION14.132TORSIONAL
31D5411X-RAY DIFFRACTION14.132TORSIONAL
32E5411X-RAY DIFFRACTION14.132TORSIONAL
33F5411X-RAY DIFFRACTION14.132TORSIONAL
34G5411X-RAY DIFFRACTION14.132TORSIONAL
35H5411X-RAY DIFFRACTION14.132TORSIONAL
36I5411X-RAY DIFFRACTION14.132TORSIONAL
37J5411X-RAY DIFFRACTION14.132TORSIONAL
41D4463X-RAY DIFFRACTION14.132TORSIONAL
42E4463X-RAY DIFFRACTION14.132TORSIONAL
43F4463X-RAY DIFFRACTION14.132TORSIONAL
44G4463X-RAY DIFFRACTION14.132TORSIONAL
45H4463X-RAY DIFFRACTION14.132TORSIONAL
46I4463X-RAY DIFFRACTION14.132TORSIONAL
47J4463X-RAY DIFFRACTION14.132TORSIONAL
51A859X-RAY DIFFRACTION14.132TORSIONAL
52B859X-RAY DIFFRACTION14.132TORSIONAL
53C859X-RAY DIFFRACTION14.132TORSIONAL
61A1677X-RAY DIFFRACTION14.132TORSIONAL
62B1677X-RAY DIFFRACTION14.132TORSIONAL
63C1677X-RAY DIFFRACTION14.132TORSIONAL
71A2033X-RAY DIFFRACTION14.132TORSIONAL
72B2033X-RAY DIFFRACTION14.132TORSIONAL
73C2033X-RAY DIFFRACTION14.132TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 15

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
4.8016-4.91290.4077470.353373978624
4.9129-5.03520.379720.35831307137942
5.0352-5.17060.3668950.33591745184056
5.1706-5.3220.34221160.35272097221367
5.322-5.49280.34991190.34762446256578
5.4928-5.68780.40121330.35422832296589
5.6878-5.91390.40211810.34193062324398
5.9139-6.18080.39071620.34523104326698
6.1808-6.50350.39691780.33433100327898
6.5035-6.90630.36661430.31963102324598
6.9063-7.4320.31031710.30263124329598
7.432-8.16620.31421960.27223100329698
8.1662-9.31670.28781540.22543125327997
9.3167-11.62320.2391700.19073139330997
11.6232-29.98310.29841620.24913062322491
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
15.54314.36922.798410.3227-1.18239.3630.3473-0.8556-0.41331.4115-0.49520.2858-0.16050.51760.22871.39310.12730.11051.62730.0731.3789-43.587-34.689141.875
27.8916-1.5333-0.28711.9240.30420.24930.528-0.6981-0.78960.1943-0.03141.07280.265-0.0461-0.55981.9511-0.19350.30451.44170.12931.4929-71.242-27.652122.662
34.13074.89241.57229.7611-0.40041.94-2.63214.0666-1.7998-4.9528-1.32940.5783-1.5399-2.20672.80233.6098-0.50010.03972.7289-0.57291.0414-70.802-20.185112.372
45.2227-0.98170.05734.78182.86420.88940.23130.8661-0.2754-0.5141-0.47320.1245-0.423-0.89680.07781.5137-0.16210.14572.15740.13081.2612-47.535-21.154110.35
58.01672.64082.48768.53444.95832.72410.25171.0691-0.62170.25240.12980.94990.45690.5207-0.38831.4930.16380.07091.76490.01911.1953-54.782-42.167105.182
64.7158-0.46671.13658.6083-0.96884.2492-0.0479-1.1473-0.02360.6739-0.20410.6490.1484-0.63020.32961.4463-0.05870.20161.4837-0.14481.153-79.559-10.12612.492
72.0937-0.09110.41713.22742.40877.8210.2360.9773-0.27630.2513-0.0664-0.11851.2355-0.2395-0.31861.3461-0.068-0.28882.01260.21381.4967-66.299-26.991-14.245
82.012.05816.57142.25422.07412.00152.52250.6398-4.5237-0.18355.0246-5.4017-2.6258-3.4567-6.02272.23720.72510.29962.18940.85392.7662-54.285-26.713-17.617
91.0114-0.63910.13586.8314-6.46779.0104-0.06980.4801-0.5032-0.7250.0017-0.40271.1145-0.48790.08051.3398-0.1557-0.2961.2062-0.14761.2572-47.179-17.9092.65
106.1564.39340.98257.15872.8263.2021-0.06720.3435-1.6021-0.3475-0.225-0.57380.0298-0.72820.37931.47240.247-0.08941.4368-0.13991.3145-53.851-39.0557.531
117.68953.78197.52391.36171.21895.8921-0.7879-0.48870.0658-0.0628-0.04381.2158-0.6498-0.76040.92131.53810.5120.03922.0093-0.26792.2561-24.297-79.3-0.353
123.48810.353-1.30680.58841.94298.2555-0.59230.26281.0717-0.30781.247-0.3197-0.32131.7145-0.51442.19130.0664-0.03381.7323-0.28952.2769-7.105-66.957-27.196
130.2329-0.2574-0.39090.22560.49611.2143-0.45213.4323-0.7944-0.5909-2.2104-1.2138-2.54251.95561.32353.1615-2.0582-0.45112.74510.41574.7824-7.939-55.723-32.279
141.31581.61461.39613.3353.56124.1574-0.9099-0.73382.2757-0.3405-0.0115-1.5125-4.8253-1.52910.74484.0970.6661-0.6961.966-0.49152.5817-18.061-47.541-13.021
156.5255-4.1588-0.65754.57060.68622.5484-0.26360.7741.1155-0.1847-0.2342-0.6982-1.57150.33470.48892.8356-0.0991-0.52981.89370.1571.88393.355-52.307-6.907
1611.6138-4.82780.77933.841.50194.2578-0.9072-1.0030.64210.19560.4946-0.0155-1.22230.08650.3851.98530.06070.10681.205-0.06211.3823-5.129-48.52294.775
174.7559-2.29031.22345.0052-1.5244.99740.01331.3727-0.6306-0.9576-0.1153-0.4130.33550.12750.14231.55790.0990.17631.8994-0.44391.5471-31-29.29983.605
181.832.1132.03975.13564.21527.69980.0618-0.2794-0.59390.08360.5921-0.69481.35030.8865-0.80771.98360.3872-0.3472.044-0.01141.5822-40.221-21.87652.387
195.91330.2422-0.1410.25151.17068.31230.6184-0.4883-0.2380.6275-0.5637-1.07540.39420.7432-0.02311.59780.1236-0.10761.28920.05741.2626-24.767-27.74624.609
200.1565-2.39010.737917.175-2.66785.19510.2267-0.3803-0.23090.083-0.49170.24820.25980.770.32421.3229-0.05940.15951.8189-0.28121.7465.939-39.00621.309
21-0.72840.8307-1.26476.4235-5.56474.48660.00550.61190.3712-0.40.60580.15440.4081-0.0678-0.54991.6256-0.21360.14212.2829-0.14872.190125.971-53.6645.229
224.82210.7035-1.49461.5998-1.19379.46450.21690.5621.23080.2531-0.23720.0881-1.81680.08840.01051.69180.0858-0.06261.18330.08171.834318.395-62.20375.223
23-0.55470.55590.76836.13141.26139.0349-0.2761-0.07580.66630.81030.0799-0.4238-0.29081.46430.33092.7265-0.2474-0.04222.5256-0.2462.632840.886-44.618109.772
248.9388-3.2754-2.41435.42111.68425.82570.04420.9768-1.0665-0.277-0.118-0.23010.6890.67420.0141.6049-0.0415-0.08681.6455-0.20541.466417.533-13.954116.713
251.2923-1.244-2.15488.58013.87196.20460.01420.9673-0.5344-0.9356-0.4138-1.61920.7641.5280.50821.62530.44590.49692.22240.1582.0045-7.25710.69483.063
262.4814-2.54211.16853.21394.91026.51290.2049-1.3251-1.37883.4239-0.5982-0.17511.93760.2410.5644.7119-0.5691-0.52782.18160.40632.6156-27.64418.97352.583
278.96062.9823-2.67147.1215-2.4789.8245-0.6623-1.12280.35060.64320.0937-0.73920.47331.50830.6471.530.2298-0.24861.3315-0.0271.7757-0.86812.37623.609
281.0828-1.71-3.36088.54570.60144.4425-0.2754-0.4308-0.6393-0.4546-0.47751.35060.4037-0.75530.72451.5044-0.12310.29311.8644-0.20892.654240.467-10.7712.921
291.1791-2.1035-4.67325.02832.06687.8747-0.6974-1.23760.58090.310.53880.2690.2268-0.20050.29411.6389-0.00430.08792.5966-0.54672.675866.72-33.44150.446
302.9967-1.3876-1.3674-0.08360.4496-0.9250.49251.61910.35021.9414-3.08023.51121.2627-2.09922.27373.2524-1.4790.4454.3047-0.32293.6863-116.239-36.258138.095
313.75250.2468-2.60595.56313.67971.7056-0.7351-1.52621.66720.2842-0.9581.0054-0.6837-0.30331.62912.3875-0.6661-0.59213.1245-0.33712.2727-90.978-41.836-53.61
324.8755-5.52910.4187.78482.27492.5264-1.82014.3342-1.33410.33560.8914-0.6264-0.16561.09850.88852.1585-0.67070.24983.9783-0.78522.830711.13-96.217-63.152
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1( CHAIN A AND RESID 1:199 )A1 - 199
2X-RAY DIFFRACTION2( CHAIN A AND RESID 200:440 )A200 - 440
3X-RAY DIFFRACTION3( CHAIN A AND RESID 441:447 )A441 - 447
4X-RAY DIFFRACTION4( CHAIN A AND RESID 645:704 )A645 - 704
5X-RAY DIFFRACTION5( CHAIN A AND RESID 478:644 )A478 - 644
6X-RAY DIFFRACTION6( CHAIN B AND RESID 1:199 )B1 - 199
7X-RAY DIFFRACTION7( CHAIN B AND RESID 200:440 )B200 - 440
8X-RAY DIFFRACTION8( CHAIN B AND RESID 441:447 )B441 - 447
9X-RAY DIFFRACTION9( CHAIN B AND RESID 645:704 )B645 - 704
10X-RAY DIFFRACTION10( CHAIN B AND RESID 478:644 )B478 - 644
11X-RAY DIFFRACTION11( CHAIN C AND RESID 1:199 )C1 - 199
12X-RAY DIFFRACTION12( CHAIN C AND RESID 200:440 )C200 - 440
13X-RAY DIFFRACTION13( CHAIN C AND RESID 441:447 )C441 - 447
14X-RAY DIFFRACTION14( CHAIN C AND RESID 645:704 )C645 - 704
15X-RAY DIFFRACTION15( CHAIN C AND RESID 478:644 )C478 - 644
16X-RAY DIFFRACTION16( CHAIN D AND RESID 255:548 )D255 - 548
17X-RAY DIFFRACTION17( CHAIN E AND RESID 255:548 )E255 - 548
18X-RAY DIFFRACTION18( CHAIN F AND RESID 255:549 )F255 - 549
19X-RAY DIFFRACTION19( CHAIN G AND RESID 255:547 )G255 - 547
20X-RAY DIFFRACTION20( CHAIN H AND RESID 255:549 )H255 - 549
21X-RAY DIFFRACTION21( CHAIN I AND RESID 255:541 )I255 - 541
22X-RAY DIFFRACTION22( CHAIN J AND RESID 255:546 )J255 - 546
23X-RAY DIFFRACTION23( CHAIN D AND RESID 64:254 )D64 - 254
24X-RAY DIFFRACTION24( CHAIN E AND RESID 64:254 )E64 - 254
25X-RAY DIFFRACTION25( CHAIN F AND RESID 64:254 )F64 - 254
26X-RAY DIFFRACTION26( CHAIN G AND RESID 64:254 )G64 - 254
27X-RAY DIFFRACTION27( CHAIN H AND RESID 64:254 )H64 - 254
28X-RAY DIFFRACTION28( CHAIN I AND RESID 64:254 )I64 - 254
29X-RAY DIFFRACTION29( CHAIN J AND RESID 64:254 )J64 - 254
30X-RAY DIFFRACTION30( CHAIN K AND RESID 3:107 )K3 - 107
31X-RAY DIFFRACTION31( CHAIN L AND RESID 3:107 )L3 - 107
32X-RAY DIFFRACTION32( CHAIN M AND RESID 3:107 )M3 - 107

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る