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- PDB-5h9f: Crystal structure of E. coli Cascade bound to a PAM-containing ds... -

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Basic information

Entry
Database: PDB / ID: 5h9f
TitleCrystal structure of E. coli Cascade bound to a PAM-containing dsDNA target at 2.45 angstrom resolution.
Components
  • (CRISPR system Cascade subunit ...) x 5
  • DNA (28-MER) Non-target
  • DNA (50-MER) Target
  • crRNA (61-MER)
KeywordsImmune System/RNA / CRISPR Cascade / Immune System-RNA Complex
Function / homology
Function and homology information


CRISPR-cas system / DNA/RNA hybrid binding / maintenance of CRISPR repeat elements / RNA processing / RNA endonuclease activity / defense response to virus / Hydrolases; Acting on ester bonds / nucleic acid binding / protein-containing complex / DNA binding ...CRISPR-cas system / DNA/RNA hybrid binding / maintenance of CRISPR repeat elements / RNA processing / RNA endonuclease activity / defense response to virus / Hydrolases; Acting on ester bonds / nucleic acid binding / protein-containing complex / DNA binding / RNA binding / zinc ion binding
Similarity search - Function
CRISPR-associated protein Cse2 / Crispr-associated protein; domain 2 / Alpha-Beta Plaits - #2660 / CRISPR-associated protein, CT1975 / CT1975-like protein / CRISPR-associated protein, CasD / CRISPR-associated protein Cse2 / Cse2 superfamily / CRISPR-associated protein Cse2 (CRISPR_cse2) / CRISPR-associated protein Cse1 ...CRISPR-associated protein Cse2 / Crispr-associated protein; domain 2 / Alpha-Beta Plaits - #2660 / CRISPR-associated protein, CT1975 / CT1975-like protein / CRISPR-associated protein, CasD / CRISPR-associated protein Cse2 / Cse2 superfamily / CRISPR-associated protein Cse2 (CRISPR_cse2) / CRISPR-associated protein Cse1 / CRISPR-associated protein Cse1 (CRISPR_cse1) / CRISPR-associated protein Cse3 / CRISPR associated protein / CRISPR_assoc / CRISPR-associated protein, Cas5 / CRISPR-associated protein (Cas_Cas5) / CRISPR-associated protein Cas5, N-terminal / Peroxidase; domain 1 / Alpha-Beta Plaits / 2-Layer Sandwich / Orthogonal Bundle / Mainly Alpha / Alpha Beta
Similarity search - Domain/homology
DNA / DNA (> 10) / RNA / RNA (> 10) / CRISPR system Cascade subunit CasB / CRISPR system Cascade subunit CasE / CRISPR system Cascade subunit CasD / CRISPR system Cascade subunit CasC / CRISPR system Cascade subunit CasA
Similarity search - Component
Biological speciesEscherichia coli (E. coli)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.45 Å
AuthorsHayes, R.P. / Xiao, Y. / Ding, F. / van Erp, P.B.G. / Rajashankar, K. / Bailey, S. / Wiedenheft, B. / Ke, A.
CitationJournal: Nature / Year: 2016
Title: Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli.
Authors: Hayes, R.P. / Xiao, Y. / Ding, F. / van Erp, P.B. / Rajashankar, K. / Bailey, S. / Wiedenheft, B. / Ke, A.
History
DepositionDec 28, 2015Deposition site: RCSB / Processing site: RCSB
Revision 1.0Feb 17, 2016Provider: repository / Type: Initial release
Revision 1.1Feb 24, 2016Group: Database references
Revision 1.2Mar 9, 2016Group: Database references
Revision 1.3Sep 27, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
Category: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / citation / database_2 / pdbx_initial_refinement_model / pdbx_struct_oper_list / struct_conn / struct_conn_type
Item: _chem_comp.type / _citation.journal_id_CSD ..._chem_comp.type / _citation.journal_id_CSD / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_oper_list.symmetry_operation / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: CRISPR system Cascade subunit CasA
B: CRISPR system Cascade subunit CasB
C: CRISPR system Cascade subunit CasB
D: CRISPR system Cascade subunit CasC
E: CRISPR system Cascade subunit CasC
F: CRISPR system Cascade subunit CasC
G: CRISPR system Cascade subunit CasC
H: CRISPR system Cascade subunit CasC
I: CRISPR system Cascade subunit CasC
J: CRISPR system Cascade subunit CasD
L: crRNA (61-MER)
M: DNA (28-MER) Non-target
N: DNA (50-MER) Target
K: CRISPR system Cascade subunit CasE
hetero molecules


Theoretical massNumber of molelcules
Total (without water)426,15115
Polymers426,08514
Non-polymers651
Water18,9161050
1


  • Idetical with deposited unit
  • defined by author&software
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area64520 Å2
ΔGint-278 kcal/mol
Surface area129270 Å2
MethodPISA
Unit cell
Length a, b, c (Å)92.979, 150.059, 400.546
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number18
Space group name H-MP22121

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Components

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CRISPR system Cascade subunit ... , 5 types, 11 molecules ABCDEFGHIJK

#1: Protein CRISPR system Cascade subunit CasA / CRISPR type I-E/Ecoli-associated protein CasA/Cse1 / CRISPR-associated protein CasA/Cse1


Mass: 55964.957 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: casA, cse1, ygcL, b2760, JW2730 / Production host: Escherichia coli (E. coli) / References: UniProt: Q46901
#2: Protein CRISPR system Cascade subunit CasB


Mass: 19231.049 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: casB, cse2, ygcK, b2759, JW2729 / Production host: Escherichia coli (E. coli) / References: UniProt: P76632
#3: Protein
CRISPR system Cascade subunit CasC


Mass: 40071.402 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: casC, cas4, cse4, ygcJ, b2758, JW2728 / Production host: Escherichia coli (E. coli) / References: UniProt: Q46899
#4: Protein CRISPR system Cascade subunit CasD


Mass: 25239.803 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: casD, cas5, ygcI, b2757, JW5844 / Production host: Escherichia coli (E. coli) / References: UniProt: Q46898
#8: Protein CRISPR system Cascade subunit CasE / CasE endoRNase / crRNA endonuclease


Mass: 22324.002 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: casE, cas6e, ygcH, b2756, JW2726 / Production host: Escherichia coli (E. coli)
References: UniProt: Q46897, Hydrolases; Acting on ester bonds

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RNA chain , 1 types, 1 molecules L

#5: RNA chain crRNA (61-MER)


Mass: 19677.646 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli)

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DNA chain , 2 types, 2 molecules MN

#6: DNA chain DNA (28-MER) Non-target


Mass: 8598.531 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Escherichia coli (E. coli)
#7: DNA chain DNA (50-MER) Target


Mass: 15389.893 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Escherichia coli (E. coli)

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Non-polymers , 2 types, 1051 molecules

#9: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: Zn
#10: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 1050 / Source method: isolated from a natural source / Formula: H2O

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION

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Sample preparation

CrystalDensity Matthews: 3.29 Å3/Da / Density % sol: 62.58 %
Crystal growTemperature: 291.95 K / Method: vapor diffusion, hanging drop / pH: 6.2 / Details: 1.6 M Na/K Phosphate

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Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 24-ID-C / Wavelength: 0.979 Å
DetectorType: PSI PILATUS 6M / Detector: PIXEL / Date: Aug 25, 2015
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.979 Å / Relative weight: 1
ReflectionResolution: 2.45→50 Å / Num. obs: 205485 / % possible obs: 99.7 % / Redundancy: 12.1 % / Rmerge(I) obs: 0.169 / Net I/σ(I): 12.9

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Processing

Software
NameVersionClassification
PHENIX1.8.4_1496refinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 4QYZ
Resolution: 2.45→49.87 Å / SU ML: 0.3 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 24.67 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.233 2000 0.97 %
Rwork0.206 --
obs0.206 205248 99.6 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement stepCycle: LAST / Resolution: 2.45→49.87 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms24982 2897 1 1050 28930
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00528672
X-RAY DIFFRACTIONf_angle_d0.78439437
X-RAY DIFFRACTIONf_dihedral_angle_d17.34810725
X-RAY DIFFRACTIONf_chiral_restr0.0344511
X-RAY DIFFRACTIONf_plane_restr0.0034635
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.4506-2.51190.31921380.295613991X-RAY DIFFRACTION97
2.5119-2.57980.32721420.285814358X-RAY DIFFRACTION100
2.5798-2.65570.31321410.269314421X-RAY DIFFRACTION100
2.6557-2.74140.30271420.257214396X-RAY DIFFRACTION100
2.7414-2.83940.30371420.255514399X-RAY DIFFRACTION100
2.8394-2.95310.29761420.251914463X-RAY DIFFRACTION100
2.9531-3.08750.28311430.245414484X-RAY DIFFRACTION100
3.0875-3.25020.30431420.232114436X-RAY DIFFRACTION100
3.2502-3.45380.28761420.221814557X-RAY DIFFRACTION100
3.4538-3.72040.23421430.200714552X-RAY DIFFRACTION100
3.7204-4.09460.19881440.17814563X-RAY DIFFRACTION100
4.0946-4.68670.16781440.158114666X-RAY DIFFRACTION100
4.6867-5.90330.17441460.171714763X-RAY DIFFRACTION100
5.9033-49.88420.20331490.190215199X-RAY DIFFRACTION100
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.12470.2092-0.08960.2148-0.04770.09880.04290.10440.2069-0.3784-0.10610.05930.01660.0628-00.35910.1630.10910.50970.03860.11679.4866-1.7199-131.7905
20.2912-0.09530.04030.2190.09860.01170.07550.0202-0.1006-0.0654-0.0435-0.03070.029-0.0014-00.26660.0721-0.01020.33590.00570.22151.0177-4.5634-123.9969
30.1390.0976-0.16080.22470.03770.20390.01930.02830.043-0.0201-0.0209-0.003-0.01340.003700.13370.0113-0.02070.24980.01430.2198-5.0320.4795-95.1885
40.0103-0.0005-0.00720.01470.00040.00510.06930.09310.0315-0.054-0.0069-0.0276-0.01960.0274-00.9351-0.36930.20320.6473-0.10110.5295-3.729946.4801-48.262
50.00130.0019-0.00260.00220.00170.0028-0.0327-0.0081-0.0076-0.0036-0.0625-0.0244-0.03060.037-01.0139-0.23630.15540.4139-0.11450.5394-8.827851.5238-35.0785
60.0061-0.0048-0.0060.00520.00160.00440.0111-0.00790.0186-0.01140.02340.09170.0029-0.014300.94290.14080.13520.655-0.08910.4678-20.706848.4791-39.4514
70.0008-0.0007-0.00440.0097-0.00380.00060.03330.02410.0528-0.00950.04090.023-0.01590.0056-01.1092-0.04890.26790.35390.01090.7937-12.820454.2564-47.9786
8-0.0086-0.00270.00160.00570.00330.0020.0160.0714-0.05370.0075-0.0451-0.02290.0065-0.077100.7621-0.0860.07130.377-0.03340.3876-15.130244.6934-47.669
90.00390.00310.00330.00390.00090.00170.00320.0226-0.011-0.0255-0.0196-0.00060.02070.018700.8888-0.2626-0.04240.8294-0.02120.6862-2.004438.3464-39.7199
100.04220.0022-0.01170.06040.00040.04020.01630.0478-0.12880.06590.05670.0561-0.07250.053100.4214-0.09960.04890.4189-0.07730.3589-13.206529.4286-41.8704
110.04050.0255-0.02290.02280.00640.00490.09820.0852-0.1785-0.08120.1763-0.0174-0.12560.030200.3989-0.09670.01730.4331-0.09270.3335-10.115129.1546-49.3829
120.0074-0.01360.00730.01950.00710.01380.01190.0254-0.0423-0.04680.0646-0.03140.00520.139200.27570.0646-0.020.3649-0.01070.3087-9.12991.6583-57.7877
130.03840.00280.00740.0260.0380.04610.1087-0.0390.01690.13630.09260.0716-0.00470.1518-00.2732-0.02290.00240.3604-0.02730.3098-16.242511.9059-53.2409
140.0527-0.0189-0.00640.02590.02310.07970.02560.0098-0.06510.13290.06370.02240.07570.1808-00.20170.033-0.03950.2554-0.01590.2695-16.92380.7539-65.3829
15-0.00190.0107-0.01410.0138-0.00330.0087-0.08380.16480.1144-0.1487-0.01120.0996-0.1545-0.0341-00.17010.0056-0.03380.2159-0.00980.2093-25.85637.0721-72.0756
160.0148-0.02420.02540.01680.03490.0073-0.04520.03170.1445-0.10790.0372-0.108-0.00590.295900.21480.041-0.00560.2690.00320.2571-15.78181.2206-73.5023
17-0.032-0.11090.00980.09340.13210.0528-0.1661-0.3013-0.70530.2944-0.6558-1.0019-0.73150.7721-01.0325-0.5203-0.1937-0.3431-0.9694-0.4156-8.205654.2102-11.1111
18-0.184-0.37650.2467-0.22310.258-0.1346-0.1179-0.4887-0.82950.3296-1.0435-1.3732-0.68041.061200.9541-0.21-0.15830.2329-0.3917-0.0932-9.104945.114-5.025
19-0.1199-0.1010.0184-0.10540.1772-0.040.15580.0283-0.23750.24440.27010.337-0.2968-0.2933-00.66690.35410.6168-2.5856-3.8158-4.71-32.197353.2929-0.0962
200.00660.0004-0.00260.0006-0.00150.00770.0005-0.0468-0.10160.03970.00920.0386-0.0395-0.0226-01.1009-0.05230.14210.8033-0.16870.4999-34.360756.744910.9042
210.001-0.00280.00170.00330.00460.00760.0306-0.0490.00790.02230.0349-0.02060.01690.069401.2956-0.1043-0.04540.4562-0.02210.3777-23.74754.127411.8923
220.0479-0.0980.0310.0510.04470.04350.0013-0.321-0.45570.0084-0.2842-0.3862-0.16740.255600.7074-0.05640.08460.2786-0.1610.177-31.514234.4806-17.962
230.0552-0.0121-0.05590.0496-0.070.1063-0.0080.01260.00430.1876-0.04150.03730.04770.0591-00.5871-0.0291-0.00210.3422-0.0380.2696-17.42697.3644-11.6732
24-0.0242-0.06230.0324-0.01960.06560.0244-0.4117-0.09740.11350.2206-0.5309-0.5847-0.50330.6832-00.53870.0970.0766-1.186-1.5072-1.3296-23.278743.6959-20.9993
250.07270.1274-0.11080.02260.03330.20630.0142-0.0594-0.14370.45870.06530.2863-0.3375-0.1474-00.75250.03530.16340.3829-0.10150.2853-42.17332.7348-13.0825
26-0.0754-0.0674-0.00310.14590.05570.19650.0612-0.09-0.0130.1974-0.05010.0215-0.0244-0.067300.2773-0.02650.03640.2525-0.02050.2482-42.12435.8089-36.3996
270.01080.0118-0.00130.00580.00660.00840.1325-0.0857-0.06570.01060.11170.0477-0.01790.015100.5513-0.1116-0.00810.37450.00320.4272-52.3389-17.4462-42.4024
280.2347-0.27360.0518-0.0019-0.15870.494-0.0017-0.06-0.01880.1071-0.00220.086-0.1336-0.1449-00.25780.02730.10020.2763-0.07660.2334-50.882821.1144-37.9643
290.0838-0.02830.01270.0088-0.02840.1603-0.0069-0.0354-0.00130.14250.04970.0425-0.0194-0.0059-00.12210.0130.01570.20630.00570.2392-51.240311.5221-66.5798
300.0128-0.00990.0080.00030.01310.02390.0518-0.0775-0.20720.12280.1282-0.0142-0.04120.095200.1827-0.0272-0.0590.2440.01230.3775-54.0726-9.2794-77.6861
310.08690.12090.01430.1482-0.28280.1272-0.0140.01340.04920.09320.06650.10220.00270.0137-00.09030.03480.01660.2067-0.02160.2707-53.889110.5602-72.2676
320.19690.0494-0.00560.08380.28360.15970.2775-0.26060.11150.4074-0.26540.1829-0.42060.3209-0-0.02820.28890.0517-0.0198-0.09510.3775-53.677933.1783-66.5167
330.1270.0107-0.01240.02380.03410.0481-0.18910.0272-0.05360.17320.12670.16750.38430.10390-0.2676-0.0192-0.13170.13680.01490.2322-36.233626.1296-87.9287
34-0.0071-0.0151-0.011-0.01130.01760.00840.3582-0.0090.3797-0.17970.39180.3711-0.0205-0.19450-1.1046-0.5977-1.5280.1878-0.4056-0.7171-49.29511.5625-111.9604
350.0257-0.00660.0095-0.02610.00430.0044-0.044-0.12860.1751-0.33270.20480.3590.10350.0342-0-0.89420.1406-1.35520.28480.3321-0.6795-44.217121.8427-119.0422
360.0549-0.0080.00480.04730.0053-0.00530.03720.0187-0.0045-0.00120.04030.02350.1535-0.033200.12970.0181-0.05780.18810.00550.1733-31.325727.8432-90.8327
370.0139-0.00590.03240.0054-0.00890.0161-0.0433-0.02830.06480.04550.0459-0.03670.0367-0.038500.15580.0097-0.00090.18080.00270.2501-40.71517.689-68.4856
380.0330.0536-0.03390.0629-0.0426-0.01260.0864-0.06950.22350.2856-0.05420.3036-0.0539-0.0853-0-0.03230.0971-0.12230.13650.08430.3178-41.116334.3083-93.5665
390.02690.01670.01970.0018-0.01810.005-0.05110.0890.2543-0.0339-0.0531-0.0063-0.00790.0167-00.2139-0.054-0.04530.21280.03370.2836-26.01138.0439-83.4271
40-0.00860.0199-0.0171-0.00910.004-0.0023-0.1443-0.13680.22590.1919-0.0346-0.0023-0.1078-0.0443-00.22380.0119-0.06250.2134-0.03050.334-26.466744.9865-83.9556
410.0349-0.0078-0.02410.00960.01280.0096-0.0245-0.13540.10910.0468-0.05120.0623-0.1763-0.103-00.27330.0522-0.02240.26740.04670.4476-41.076147.6594-90.7623
420.0444-0.0674-0.03590.0293-0.03190.02720.05970.05330.07680.0574-0.00630.02850.09920.0044-00.1051-0.0078-0.02010.18170.0140.2611-12.110928.4424-98.0823
430.02930.0097-0.00580.02660.02240.0049-0.06890.05680.14280.21040.02220.0310.06570.1034-00.0888-0.01440.00030.1750.03510.2014-11.523727.8881-101.125
44-0.0012-0.0011-0.00510.003-0.0049-0.0001-0.1223-0.240.2165-0.1525-0.2180.1435-0.0673-0.1436-00.2240.1405-0.05750.17620.3740.3314-14.320746.3718-119.72
450.00420.0005-0.0040.01190.0020.0162-0.0187-0.01430.0341-0.0239-0.0662-0.0262-0.0242-0.017700.8293-0.04670.0560.76490.3050.63750.56544.1367-139.0768
460.08610.02230.0020.03390.05840.0034-0.054-0.49590.77770.0718-0.45410.19050.1713-0.25200.00930.3394-0.3017-0.65291.1631-0.6849-7.053634.7459-126.0731
470.1727-0.2281-0.10710.1621-0.04160.02940.17390.03910.2269-0.035-0.0932-0.0532-0.0856-0.09380-0.1525-0.1123-0.07360.11380.04020.3242-13.204333.8575-96.905
480.0394-0.0080.01450.0255-0.00220.0184-0.0666-0.18560.2610.0053-0.044-0.1354-0.2241-0.017500.344-0.02620.00750.33130.07810.5504-5.045349.4616-92.9599
490.00380.00040.00640.0102-0.00160.0069-0.0571-0.0046-0.0099-0.0345-0.0799-0.0864-0.02760.0139-0-0.1487-0.1454-0.02160.27330.08280.530821.391129.3372-101.3675
500.0028-0.00120.0002-0.0003-0.0009-0.0002-0.00660.01060.0185-0.0187-0.0528-0.03490.0086-0.00500.1270.0119-0.00960.25640.0440.27961.253324.4229-100.4024
510.00120.0010.00010.00150.00510.0033-0.0559-0.04380.00470.0237-0.039-0.02520.01540.012800.20340.0286-0.00320.28940.03490.2224.558516.4527-110.9784
520.0049-0.0045-0.0111-0.00660.00320.01390.02910.07920.1519-0.0449-0.08-0.0810.0574-0.0500.189-0.0133-0.01770.31180.03670.28136.871221.276-110.5792
530.00370.00070.0014-0.0016-0.0003-0.00080.02440.05110.0196-0.0716-0.05920.0723-0.02050.0121-00.4066-0.05630.05990.46160.15270.49339.036334.6842-120.4711
540.00270.0020.0020.0004-0.00080.001-0.03810.0779-0.0209-0.0544-0.0642-0.00360.0165-0.022500.28690.05050.27130.46550.20730.54117.964129.6347-120.5813
55-0.0084-0.0067-0.0217-0.0171-0.0025-0.007-0.06670.08370.1236-0.1357-0.0699-0.14270.02560.073200.212-0.0265-0.0120.41120.01340.365314.099422.1853-97.7634
560.006-0.00040.00270.0034-0.00190.0065-0.0071-0.01240.0221-0.00760.02680.02910.0325-0.018600.13930.0215-0.08410.2778-0.06140.2155.316618.4429-85.2557
57-0.0055-0.00020.0094-0.0036-0.0044-0.00540.0211-0.0189-0.05490.0795-0.0516-0.08210.0347-0.069800.14410.0116-0.03950.23910.05180.267-10.115518.9495-106.6425
580.0034-0.00390.00670.02210.0040.0063-0.09590.0483-0.10320.0303-0.15410.11440.0709-0.027900.51280.113-0.16890.32870.06580.2374-13.814223.6408-126.3703
590.02330.00240.0208-0.01640.0075-0.0230.1452-0.04370.0205-0.1604-0.1607-0.0408-0.0162-0.030300.18010.03630.02690.2390.07610.25638.862723.6714-107.8346
600.0031-0.005-0.0130.01010.00840.00460.00610.0880.06490.0008-0.1244-0.0687-0.0774-0.0521-00.216-0.0420.03870.26620.06430.563114.488739.2219-108.6153
610.00980.005-0.01190.0194-0.01890.00910.05550.02340.0997-0.1048-0.1211-0.1567-0.1167-0.0775-00.1624-0.033-0.01680.25830.05770.39229.106831.5495-102.1535
620.00340.00620.00420.0014-0.00040.0025-0.00250.00650.04050.0159-0.0263-0.00340.04540.040600.163-0.0767-0.07290.50010.07350.472526.844823.7064-97.0562
630.0110.0029-0.00010.01060.00060.00290.06690.01920.13890.0834-0.0274-0.0537-0.06360.059300.2061-0.00120.00470.37490.0540.36720.627719.7982-98.6415
640.0050.0005-0.00270.00240.00070.00380.0186-0.02920.0001-0.00330.1239-0.08170.04750.0326-00.2310.02580.02320.31270.05010.365422.38599.9566-104.7459
650.00180.0025-0.00140.0044-0.0014-0.00310.05320.0010.05150.0472-0.0053-0.0835-0.04780.0527-00.25510.05460.05170.43540.09130.34111.025919.8994-121.137
660.00630.00390.00070.01280.00530.00360.01410.0946-0.02370.1197-0.0916-0.1239-0.0069-0.0485-00.21660.0151-0.00370.37490.03110.344617.40314.2138-108.901
670.00990.04190.01130.00210.02710.02160.03780.06770.047-0.0611-0.0692-0.12690.0335-0.0273-00.15660.01370.00150.28350.10210.2702-6.47825.4453-112.9165
68-0.01090.0322-0.0021-0.0279-0.021-0.0034-0.01570.03010.1029-0.01720.01680.0177-0.0545-0.0791-00.1302-0.0236-0.05620.1734-0.00120.1854-34.473817.8407-98.576
69-0.23770.07670.23930.08450.0212-0.0630.12330.0183-0.03440.08810.03970.0186-0.2024-0.2421-00.2834-0.04650.02040.2351-0.06710.1903-34.374316.1908-45.0574
70-0.01250.00150.00620.00260.00940.0208-0.0157-0.3405-0.11420.02490.051-0.031-0.00720.056601.169-0.51240.0295-0.4318-0.737-0.02-12.662556.0565-17.7592
710.0051-0.00170.00020.0040.00360.0047-0.0186-0.0146-0.03750.0247-0.01560.02710.0180.016201.3972-0.2890.13910.5222-0.13271.457-7.880873.3812-23.5765
72-0.0050.00740.00380.0118-0.00130.0296-0.0138-0.0501-0.0568-0.00820.1186-0.0761-0.1084-0.071-02.1514-0.25620.53170.8018-0.12050.9387-11.417893.1067-34.7325
730.0031-0.00090.00130.0030.00650.00320.0581-0.05540.1123-0.03360.0257-0.22180.03450.027101.6647-0.1650.24720.6248-0.10610.7686-14.46393.6297-29.5232
740.0007-0.04380.0797-0.01390.0159-0.00910.04760.247-0.05190.090.00520.14340.3017-0.130600.3690.2133-0.04350.7640.01890.4873-27.8222.2429-143.1736
750.03250.022-0.02150.06970.02340.0033-0.06660.3485-0.0742-0.03570.01650.10390.02370.0547-00.8879-0.01880.04080.60320.01080.5011-14.4015-9.2728-101.3265
76-0.1792-0.0035-0.09290.1696-0.02580.03790.1290.10020.02540.09160.0270.00640.1210.129200.1768-0.02880.03690.2807-0.05980.2188-23.699415.5755-61.7754
770.0042-0.0114-0.0051-0.00580.00260.0065-0.03850.0653-0.011-0.0717-0.08330.02150.02330.0467-00.65470.575-0.34190.80350.27710.1262-23.545910.568-139.4585
780.0076-0.0046-0.0024-0.0036-0.0036-0.00080.0041-0.0559-0.06590.0359-0.0202-0.0380.01570.0124-02.43730.1056-0.01142.53570.47252.2835-29.69733.9567-150.5386
790.0011-0.00160.01180.0073-0.00060.0274-0.08820.07610.0146-0.02170.1020.1268-0.0393-0.098-01.7899-0.00470.05140.7213-0.07290.4965-31.838377.4739-44.1724
800.0049-0.00230.00260.0394-0.01850.0049-0.10170.04110.19410.07110.03030.0016-0.0358-0.0343-01.18740.1219-0.19850.74960.02320.4935-42.05781.1778-38.1983
81-0.01120.0096-0.0359-0.0320.0514-0.0364-0.07830.0887-0.1286-0.1375-0.3067-0.5384-0.0028-0.038401.3016-0.18080.1556-1.8626-1.8188-1.5404-21.376580.994-24.7917
820.0116-0.02470.01670.0509-0.00670.0379-0.1848-0.3782-0.19810.00680.13770.058-0.0402-0.0611-02.00870.01980.0330.0887-0.6518-0.5096-28.802380.5877-27.2864
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1CHAIN 'A' AND (RESID 2 THROUGH 212 )
2X-RAY DIFFRACTION2CHAIN 'A' AND (RESID 213 THROUGH 375 )
3X-RAY DIFFRACTION3CHAIN 'A' AND (RESID 376 THROUGH 495 )
4X-RAY DIFFRACTION4CHAIN 'B' AND (RESID 3 THROUGH 16 )
5X-RAY DIFFRACTION5CHAIN 'B' AND (RESID 17 THROUGH 26 )
6X-RAY DIFFRACTION6CHAIN 'B' AND (RESID 27 THROUGH 37 )
7X-RAY DIFFRACTION7CHAIN 'B' AND (RESID 38 THROUGH 51 )
8X-RAY DIFFRACTION8CHAIN 'B' AND (RESID 52 THROUGH 67 )
9X-RAY DIFFRACTION9CHAIN 'B' AND (RESID 68 THROUGH 75 )
10X-RAY DIFFRACTION10CHAIN 'B' AND (RESID 76 THROUGH 124 )
11X-RAY DIFFRACTION11CHAIN 'B' AND (RESID 125 THROUGH 159 )
12X-RAY DIFFRACTION12CHAIN 'C' AND (RESID 3 THROUGH 15 )
13X-RAY DIFFRACTION13CHAIN 'C' AND (RESID 16 THROUGH 51 )
14X-RAY DIFFRACTION14CHAIN 'C' AND (RESID 52 THROUGH 98 )
15X-RAY DIFFRACTION15CHAIN 'C' AND (RESID 99 THROUGH 124 )
16X-RAY DIFFRACTION16CHAIN 'C' AND (RESID 125 THROUGH 156 )
17X-RAY DIFFRACTION17CHAIN 'D' AND (RESID 2 THROUGH 115 )
18X-RAY DIFFRACTION18CHAIN 'D' AND (RESID 116 THROUGH 243 )
19X-RAY DIFFRACTION19CHAIN 'D' AND (RESID 244 THROUGH 334 )
20X-RAY DIFFRACTION20CHAIN 'D' AND (RESID 335 THROUGH 349 )
21X-RAY DIFFRACTION21CHAIN 'D' AND (RESID 350 THROUGH 361 )
22X-RAY DIFFRACTION22CHAIN 'E' AND (RESID 2 THROUGH 57 )
23X-RAY DIFFRACTION23CHAIN 'E' AND (RESID 58 THROUGH 175 )
24X-RAY DIFFRACTION24CHAIN 'E' AND (RESID 176 THROUGH 212 )
25X-RAY DIFFRACTION25CHAIN 'E' AND (RESID 213 THROUGH 361 )
26X-RAY DIFFRACTION26CHAIN 'F' AND (RESID 2 THROUGH 115 )
27X-RAY DIFFRACTION27CHAIN 'F' AND (RESID 116 THROUGH 145 )
28X-RAY DIFFRACTION28CHAIN 'F' AND (RESID 146 THROUGH 362 )
29X-RAY DIFFRACTION29CHAIN 'G' AND (RESID 2 THROUGH 84 )
30X-RAY DIFFRACTION30CHAIN 'G' AND (RESID 85 THROUGH 115 )
31X-RAY DIFFRACTION31CHAIN 'G' AND (RESID 116 THROUGH 260 )
32X-RAY DIFFRACTION32CHAIN 'G' AND (RESID 261 THROUGH 362 )
33X-RAY DIFFRACTION33CHAIN 'H' AND (RESID 2 THROUGH 57 )
34X-RAY DIFFRACTION34CHAIN 'H' AND (RESID 58 THROUGH 115 )
35X-RAY DIFFRACTION35CHAIN 'H' AND (RESID 116 THROUGH 175 )
36X-RAY DIFFRACTION36CHAIN 'H' AND (RESID 176 THROUGH 195 )
37X-RAY DIFFRACTION37CHAIN 'H' AND (RESID 196 THROUGH 221 )
38X-RAY DIFFRACTION38CHAIN 'H' AND (RESID 222 THROUGH 284 )
39X-RAY DIFFRACTION39CHAIN 'H' AND (RESID 285 THROUGH 304 )
40X-RAY DIFFRACTION40CHAIN 'H' AND (RESID 305 THROUGH 323 )
41X-RAY DIFFRACTION41CHAIN 'H' AND (RESID 324 THROUGH 361 )
42X-RAY DIFFRACTION42CHAIN 'I' AND (RESID 2 THROUGH 31 )
43X-RAY DIFFRACTION43CHAIN 'I' AND (RESID 32 THROUGH 49 )
44X-RAY DIFFRACTION44CHAIN 'I' AND (RESID 50 THROUGH 71 )
45X-RAY DIFFRACTION45CHAIN 'I' AND (RESID 72 THROUGH 97 )
46X-RAY DIFFRACTION46CHAIN 'I' AND (RESID 107 THROUGH 195 )
47X-RAY DIFFRACTION47CHAIN 'I' AND (RESID 196 THROUGH 319 )
48X-RAY DIFFRACTION48CHAIN 'I' AND (RESID 320 THROUGH 361 )
49X-RAY DIFFRACTION49CHAIN 'J' AND (RESID 1 THROUGH 10 )
50X-RAY DIFFRACTION50CHAIN 'J' AND (RESID 11 THROUGH 15 )
51X-RAY DIFFRACTION51CHAIN 'J' AND (RESID 16 THROUGH 20 )
52X-RAY DIFFRACTION52CHAIN 'J' AND (RESID 21 THROUGH 43 )
53X-RAY DIFFRACTION53CHAIN 'J' AND (RESID 44 THROUGH 50 )
54X-RAY DIFFRACTION54CHAIN 'J' AND (RESID 51 THROUGH 60 )
55X-RAY DIFFRACTION55CHAIN 'J' AND (RESID 61 THROUGH 72 )
56X-RAY DIFFRACTION56CHAIN 'J' AND (RESID 73 THROUGH 79 )
57X-RAY DIFFRACTION57CHAIN 'J' AND (RESID 80 THROUGH 89 )
58X-RAY DIFFRACTION58CHAIN 'J' AND (RESID 90 THROUGH 102 )
59X-RAY DIFFRACTION59CHAIN 'J' AND (RESID 103 THROUGH 129 )
60X-RAY DIFFRACTION60CHAIN 'J' AND (RESID 130 THROUGH 143 )
61X-RAY DIFFRACTION61CHAIN 'J' AND (RESID 144 THROUGH 163 )
62X-RAY DIFFRACTION62CHAIN 'J' AND (RESID 164 THROUGH 173 )
63X-RAY DIFFRACTION63CHAIN 'J' AND (RESID 174 THROUGH 187 )
64X-RAY DIFFRACTION64CHAIN 'J' AND (RESID 188 THROUGH 196 )
65X-RAY DIFFRACTION65CHAIN 'J' AND (RESID 197 THROUGH 206 )
66X-RAY DIFFRACTION66CHAIN 'J' AND (RESID 207 THROUGH 219 )
67X-RAY DIFFRACTION67CHAIN 'L' AND (RESID 1 THROUGH 10 )
68X-RAY DIFFRACTION68CHAIN 'L' AND (RESID 11 THROUGH 15 )
69X-RAY DIFFRACTION69CHAIN 'L' AND (RESID 16 THROUGH 35 )
70X-RAY DIFFRACTION70CHAIN 'L' AND (RESID 36 THROUGH 40 )
71X-RAY DIFFRACTION71CHAIN 'L' AND (RESID 41 THROUGH 43 )
72X-RAY DIFFRACTION72CHAIN 'L' AND (RESID 44 THROUGH 53 )
73X-RAY DIFFRACTION73CHAIN 'L' AND (RESID 54 THROUGH 60 )
74X-RAY DIFFRACTION74CHAIN 'M' AND (RESID 1 THROUGH 18 )
75X-RAY DIFFRACTION75CHAIN 'M' AND (RESID 19 THROUGH 28 )
76X-RAY DIFFRACTION76CHAIN 'N' AND (RESID 1 THROUGH 34 )
77X-RAY DIFFRACTION77CHAIN 'N' AND (RESID 35 THROUGH 40 )
78X-RAY DIFFRACTION78CHAIN 'N' AND (RESID 41 THROUGH 50 )
79X-RAY DIFFRACTION79CHAIN 'K' AND (RESID 1 THROUGH 56 )
80X-RAY DIFFRACTION80CHAIN 'K' AND (RESID 57 THROUGH 82 )
81X-RAY DIFFRACTION81CHAIN 'K' AND (RESID 83 THROUGH 130 )
82X-RAY DIFFRACTION82CHAIN 'K' AND (RESID 131 THROUGH 199 )

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