[English] 日本語
Yorodumi
- PDB-4tvx: Crystal structure of the E. coli CRISPR RNA-guided surveillance c... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 4tvx
TitleCrystal structure of the E. coli CRISPR RNA-guided surveillance complex, Cascade
Components
  • (CRISPR system Cascade subunit ...) x 5
  • Escherichia coli strain ECOR44 cluster 1 CRISPR region
KeywordsHydrolase/RNA / CRISPR / RNA / Surveillance / Complex / Hydrolase-RNA complex
Function / homology
Function and homology information


CRISPR-cas system / DNA/RNA hybrid binding / maintenance of CRISPR repeat elements / RNA processing / RNA endonuclease activity / defense response to virus / Hydrolases; Acting on ester bonds / nucleic acid binding / protein-containing complex / DNA binding ...CRISPR-cas system / DNA/RNA hybrid binding / maintenance of CRISPR repeat elements / RNA processing / RNA endonuclease activity / defense response to virus / Hydrolases; Acting on ester bonds / nucleic acid binding / protein-containing complex / DNA binding / RNA binding / zinc ion binding
Similarity search - Function
CRISPR-associated protein, CT1975 / CT1975-like protein / CRISPR-associated protein, CasD / CRISPR-associated protein Cse2 / Cse2 superfamily / CRISPR-associated protein Cse2 (CRISPR_cse2) / CRISPR-associated protein Cse1 / CRISPR-associated protein Cse1 (CRISPR_cse1) / CRISPR-associated protein Cse3 / CRISPR associated protein ...CRISPR-associated protein, CT1975 / CT1975-like protein / CRISPR-associated protein, CasD / CRISPR-associated protein Cse2 / Cse2 superfamily / CRISPR-associated protein Cse2 (CRISPR_cse2) / CRISPR-associated protein Cse1 / CRISPR-associated protein Cse1 (CRISPR_cse1) / CRISPR-associated protein Cse3 / CRISPR associated protein / CRISPR_assoc / CRISPR-associated protein, Cas5 / CRISPR-associated protein (Cas_Cas5) / CRISPR-associated protein Cas5, N-terminal
Similarity search - Domain/homology
: / RNA / RNA (> 10) / CRISPR system Cascade subunit CasB / CRISPR system Cascade subunit CasE / CRISPR system Cascade subunit CasD / CRISPR system Cascade subunit CasC / CRISPR system Cascade subunit CasA
Similarity search - Component
Biological speciesEscherichia coli (E. coli)
MethodX-RAY DIFFRACTION / SYNCHROTRON / Resolution: 3.24 Å
AuthorsJackson, R.N. / Golden, S.M. / Carter, J. / Wiedenheft, B.
Funding support United States, 4items
OrganizationGrant numberCountry
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)P20 GM103500 United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01GM108888 United States
National Science Foundation (NSF, United States)EPS-110134 United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)F32 GM108436 United States
CitationJournal: Science / Year: 2014
Title: Structural biology. Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli.
Authors: Jackson, R.N. / Golden, S.M. / van Erp, P.B. / Carter, J. / Westra, E.R. / Brouns, S.J. / van der Oost, J. / Terwilliger, T.C. / Read, R.J. / Wiedenheft, B.
History
DepositionJun 28, 2014Deposition site: RCSB / Processing site: RCSB
Revision 1.0Aug 13, 2014Provider: repository / Type: Initial release
Revision 1.1Aug 20, 2014Group: Derived calculations / Other
Revision 1.2Aug 27, 2014Group: Database references
Revision 1.3Oct 1, 2014Group: Database references
SupersessionDec 10, 2014ID: 1VY8, 1VY9
Revision 1.4Dec 10, 2014Group: Other
Revision 1.5Sep 6, 2017Group: Author supporting evidence / Database references ...Author supporting evidence / Database references / Derived calculations / Source and taxonomy
Category: citation / entity_src_gen ...citation / entity_src_gen / pdbx_audit_support / pdbx_struct_oper_list
Item: _citation.journal_id_CSD / _entity_src_gen.pdbx_alt_source_flag ..._citation.journal_id_CSD / _entity_src_gen.pdbx_alt_source_flag / _pdbx_audit_support.funding_organization / _pdbx_struct_oper_list.symmetry_operation
Revision 1.6Nov 27, 2019Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
Revision 1.7Mar 23, 2022Group: Author supporting evidence / Database references / Refinement description
Category: database_2 / pdbx_audit_support / refine_hist
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_audit_support.funding_organization / _pdbx_audit_support.grant_number
Revision 1.8Dec 27, 2023Group: Data collection / Category: chem_comp_atom / chem_comp_bond

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
W: CRISPR system Cascade subunit CasB
V: CRISPR system Cascade subunit CasB
K: CRISPR system Cascade subunit CasB
J: CRISPR system Cascade subunit CasB
F: CRISPR system Cascade subunit CasC
D: CRISPR system Cascade subunit CasC
E: CRISPR system Cascade subunit CasC
C: CRISPR system Cascade subunit CasC
B: CRISPR system Cascade subunit CasC
G: CRISPR system Cascade subunit CasC
A: CRISPR system Cascade subunit CasE
H: CRISPR system Cascade subunit CasD
R: CRISPR system Cascade subunit CasC
P: CRISPR system Cascade subunit CasC
Q: CRISPR system Cascade subunit CasC
O: CRISPR system Cascade subunit CasC
N: CRISPR system Cascade subunit CasC
S: CRISPR system Cascade subunit CasC
T: CRISPR system Cascade subunit CasD
M: CRISPR system Cascade subunit CasE
L: Escherichia coli strain ECOR44 cluster 1 CRISPR region
X: Escherichia coli strain ECOR44 cluster 1 CRISPR region
U: CRISPR system Cascade subunit CasA
I: CRISPR system Cascade subunit CasA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)804,32526
Polymers804,19424
Non-polymers1312
Water0
1
W: CRISPR system Cascade subunit CasB
V: CRISPR system Cascade subunit CasB
R: CRISPR system Cascade subunit CasC
P: CRISPR system Cascade subunit CasC
Q: CRISPR system Cascade subunit CasC
O: CRISPR system Cascade subunit CasC
N: CRISPR system Cascade subunit CasC
S: CRISPR system Cascade subunit CasC
T: CRISPR system Cascade subunit CasD
M: CRISPR system Cascade subunit CasE
X: Escherichia coli strain ECOR44 cluster 1 CRISPR region
U: CRISPR system Cascade subunit CasA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)402,16213
Polymers402,09712
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
K: CRISPR system Cascade subunit CasB
J: CRISPR system Cascade subunit CasB
F: CRISPR system Cascade subunit CasC
D: CRISPR system Cascade subunit CasC
E: CRISPR system Cascade subunit CasC
C: CRISPR system Cascade subunit CasC
B: CRISPR system Cascade subunit CasC
G: CRISPR system Cascade subunit CasC
A: CRISPR system Cascade subunit CasE
H: CRISPR system Cascade subunit CasD
L: Escherichia coli strain ECOR44 cluster 1 CRISPR region
I: CRISPR system Cascade subunit CasA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)402,16213
Polymers402,09712
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)200.851, 214.541, 217.383
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121

-
Components

-
CRISPR system Cascade subunit ... , 5 types, 22 molecules WVKJFDECBGRPQONSAMHTUI

#1: Protein
CRISPR system Cascade subunit CasB


Mass: 19231.049 Da / Num. of mol.: 4
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K12 / Gene: casB, cse2, ygcK, b2759, JW2729 / Production host: Escherichia coli (E. coli) / References: UniProt: P76632
#2: Protein
CRISPR system Cascade subunit CasC


Mass: 40071.402 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K12 / Gene: casC, cas4, cse4, ygcJ, b2758, JW2728 / Production host: Escherichia coli (E. coli) / References: UniProt: Q46899
#3: Protein CRISPR system Cascade subunit CasE / CasE endoRNase / crRNA endonuclease


Mass: 22324.002 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K12 / Gene: casE, cas6e, ygcH, b2756, JW2726 / Production host: Escherichia coli (E. coli)
References: UniProt: Q46897, Hydrolases; Acting on ester bonds
#4: Protein CRISPR system Cascade subunit CasD


Mass: 25239.803 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K12 / Gene: casD, cas5, ygcI, b2757, JW5844 / Production host: Escherichia coli (E. coli) / References: UniProt: Q46898
#6: Protein CRISPR system Cascade subunit CasA / CRISPR type I-E/Ecoli-associated protein CasA/Cse1 / CRISPR-associated protein CasA/Cse1


Mass: 55964.957 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K12 / Gene: casA, cse1, ygcL, b2760, JW2730 / Production host: Escherichia coli (E. coli) / References: UniProt: Q46901

-
RNA chain / Non-polymers , 2 types, 4 molecules LX

#5: RNA chain Escherichia coli strain ECOR44 cluster 1 CRISPR region


Mass: 19677.646 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: GenBank: 50811866
#7: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: Zn

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.9 Å3/Da / Density % sol: 60 % / Description: P212121
Crystal growTemperature: 277 K / Method: vapor diffusion, hanging drop / pH: 7.5
Details: PEG 8000, sodium chloride, sodium thiocyanate, HEPES
PH range: 6.5-8.0 / Temp details: growth occurs at 277-297 K

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: SSRL / Beamline: BL12-2 / Wavelength: 1 Å
DetectorType: PSI PILATUS 6M / Detector: PIXEL / Date: Feb 4, 2013
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 3.24→39.614 Å / Num. all: 297628 / Num. obs: 148870 / % possible obs: 98.89 % / Redundancy: 6.8 % / Rmerge(I) obs: 0.149 / Net I/σ(I): 8.5
Reflection shellResolution: 3.24→3.356 Å / Redundancy: 6.9 % / Rmerge(I) obs: 0.99 / Mean I/σ(I) obs: 2.38 / % possible all: 99.9

-
Processing

SoftwareName: PHENIX / Version: (phenix.refine: dev_1760) / Classification: refinement
RefinementResolution: 3.24→39.614 Å / SU ML: 0.39 / Cross valid method: FREE R-VALUE / σ(F): 1.33 / Phase error: 27.62 / Stereochemistry target values: ML
RfactorNum. reflection% reflectionSelection details
Rfree0.2675 2011 1.35 %Random selection
Rwork0.2338 ---
obs0.2342 148795 99.84 %-
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement stepCycle: LAST / Resolution: 3.24→39.614 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms50698 2564 2 0 53264
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00754544
X-RAY DIFFRACTIONf_angle_d1.23174488
X-RAY DIFFRACTIONf_dihedral_angle_d15.67919862
X-RAY DIFFRACTIONf_chiral_restr0.0478572
X-RAY DIFFRACTIONf_plane_restr0.0069248
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3.24-3.3210.28361400.318610396X-RAY DIFFRACTION100
3.321-3.41070.32941490.309410363X-RAY DIFFRACTION100
3.4107-3.5110.31771460.295310374X-RAY DIFFRACTION100
3.511-3.62430.33351470.277410386X-RAY DIFFRACTION100
3.6243-3.75370.29741440.263510410X-RAY DIFFRACTION100
3.7537-3.90390.28831350.259610400X-RAY DIFFRACTION100
3.9039-4.08140.28331560.247610421X-RAY DIFFRACTION100
4.0814-4.29630.21761330.23510472X-RAY DIFFRACTION100
4.2963-4.56520.26231400.214810470X-RAY DIFFRACTION100
4.5652-4.9170.21281370.200610475X-RAY DIFFRACTION100
4.917-5.41080.2411460.218710504X-RAY DIFFRACTION100
5.4108-6.19110.30011380.230910559X-RAY DIFFRACTION100
6.1911-7.79050.25261450.234210656X-RAY DIFFRACTION100
7.7905-39.61740.25681550.188210898X-RAY DIFFRACTION100
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
14.4989-0.1819-0.84795.28631.27762.03640.5948-0.4529-1.00770.81010.50540.05851.2636-0.9627-0.80260.940.0126-0.15670.90340.1550.968918.242-23.5862-9.2262
23.08543.258-1.30653.4823-1.3294.4055-0.076-0.9179-0.01891.03640.0210.5585-0.4736-0.54970.11391.12050.0003-0.13761.1652-0.33740.634326.2252-11.5254-6.8969
34.3376-0.31620.7390.9577-1.17114.1541-0.47730.5768-0.4814-0.61760.5181-0.07350.532-0.3547-0.09280.8196-0.1163-0.15490.7837-0.01250.76228.9532-19.7077-17.2563
44.2992-1.450.60582.0237-0.25252.259-0.0744-0.9577-0.24490.57040.32970.11760.2065-0.3239-0.28010.7044-0.0413-0.04790.757-0.02230.5039.7962-16.5618-15.4728
55.93581.22253.87933.6045-1.86076.4279-0.07450.4451-0.1074-0.82050.0692-0.3027-1.04650.96350.03990.7688-0.0830.03060.6984-0.13090.599313.1993-8.5722-25.9317
64.5241-0.7697-2.28071.72220.14585.2643-0.2012-0.5162-0.5123-0.3761-0.22280.64680.6354-0.62570.23950.7388-0.35490.00711.1576-0.06260.680311.468-20.7701-19.2673
78.162-3.0724-2.90116.37411.97966.27250.3788-0.2703-0.5811-0.1651-0.26330.0410.1799-1.0393-0.060.6877-0.0089-0.06040.8022-0.06080.51551.354-15.7507-26.8022
82.55960.01550.1962.49850.59053.1618-0.01010.82070.37250.04520.09260.17380.33611.5158-0.02940.9746-0.0844-0.06921.4369-0.10451.029561.8485-19.9137-31.7787
92.3071-1.36480.29615.8918-0.31424.2824-0.53970.1604-0.76680.1950.97610.58840.87180.5342-0.45220.98270.0046-0.00961.11060.04520.853753.7527-25.4193-23.1054
104.8805-0.84620.4714.58-0.91696.3948-0.0888-0.75721.12030.0337-0.46690.6598-0.0790.53680.46050.9113-0.1231-0.11770.9555-0.15870.786945.0017-15.9271-13.6207
113.509-0.6109-1.08382.00290.25673.0372-0.21250.1136-0.0017-0.3643-0.23680.3624-0.2880.06680.37350.9463-0.0357-0.13240.8568-0.06840.809146.819-20.0637-19.9917
120.06250.1471-0.320.6815-1.20342.3268-0.325-0.8886-0.01961.0524-0.2674-0.7967-0.38190.44640.36250.9711-0.0186-0.13721.15580.141.371371.9504-44.3663-28.6848
134.19790.715-0.94414.40360.70513.84810.01010.95050.0936-0.4949-0.01190.1641-0.82030.08840.00790.7835-0.08240.08640.76510.12440.615574.5847-51.0012-48.4639
145.8658-0.7793-0.55892.84050.38232.6692-0.1118-0.12010.65250.09670.24560.4964-0.63450.1604-0.10850.83140.01250.15350.52870.09160.67470.9324-49.5947-40.1782
155.51970.49781.926.0715-1.19274.67430.10860.9273-0.1566-0.0333-0.0272-0.00830.0187-0.0382-0.0070.56560.0928-0.06370.7649-0.08040.39557.5898-65.5061-40.6016
167.3047-1.21180.71748.5707-0.73687.6308-0.1445-0.13-0.812-0.40620.6030.03480.45190.5489-0.34640.72810.1337-0.11380.36890.01580.527466.5197-62.7631-44.1467
174.85841.2333-0.60063.6981-0.26092.13960.5880.37770.73510.1301-0.1510.0311-0.3926-0.2915-0.45250.61610.13650.07130.57650.15340.673558.2167-57.984-34.718
185.5294-0.3117-0.32513.1913-0.66182.67350.0356-0.487-0.35380.5202-0.2601-0.26410.17091.00390.37290.8124-0.0931-0.08791.0204-0.13361.0178115.0418-62.8323-41.9683
194.6184-0.93510.59182.17760.49013.97020.3024-0.965-0.00650.3605-0.6870.3035-0.6129-0.07350.28380.7506-0.1469-0.05491.1569-0.04831.1326105.733-54.3613-37.9638
204.952-1.19750.54483.81991.06473.2944-0.26371.0947-0.17450.5782-0.02270.3251-0.0431-0.45060.25220.8411-0.2790.1041.0033-0.01410.616397.6399-53.3649-50.2864
215.0653-0.34180.99833.5599-0.16533.26260.1599-0.84440.47740.16740.60470.36320.1295-0.2537-0.52290.659-0.1819-0.00570.8371-0.01140.776995.3823-52.4537-40.6322
221.6373-0.13840.11972.3545-1.05251.632-0.23620.2601-0.4274-0.02050.18660.28490.0814-0.21540.12690.2611-0.05830.06790.4749-0.09930.444564.5741-93.3204-31.4153
231.2969-0.27980.53711.4275-0.03210.7650.25690.3049-1.06810.1567-0.11170.58520.3059-0.6138-0.0210.8898-0.35080.01520.90110.00591.237140.5668-111.6414-27.0638
243.38790.058-0.62182.02540.05063.0582-0.3150.4614-0.54460.95210.88841.46380.1929-1.012-0.73791.3449-0.26620.45970.92780.01781.360542.2571-120.5278-14.0095
253.3271.4165-1.5940.8059-1.38221.6217-0.19450.0721-0.32480.66470.07110.70021.3309-0.28970.27980.8433-0.23440.26820.4976-0.01990.885253.9969-109.7004-18.1344
261.6568-0.3484-0.17391.6666-0.74433.5387-0.06110.2566-0.2942-0.14740.07590.16760.2633-0.24890.04320.2178-0.0850.04960.4004-0.14060.446864.3924-94.4392-34.5916
273.4974-2.08282.64562.2934-3.54375.6280.22730.11890.2063-0.2556-0.189-0.41161.0777-0.07710.0180.49130.07890.00270.3327-0.13250.549769.7129-96.8042-36.8624
283.10311.8674-1.15536.0022-2.10835.7647-0.1575-0.1049-0.06980.5011-0.0913-0.7443-0.40250.45860.32580.3396-0.0095-0.13520.5185-0.03810.326378.4853-87.223-25.1308
292.2992-1.02824.50143.0032-4.90142.0871-0.53610.07150.0186-0.152-0.7715-1.20530.07061.91731.16530.43390.0660.04970.51190.13920.668784.3946-90.8579-23.3257
303.3613-0.8371.0843.62991.35538.0039-0.25120.3595-0.3969-0.0278-0.1626-1.03871.28641.93810.1410.56590.26980.12770.5355-0.02820.710483.8534-105.5477-28.079
312.1222-0.54280.05681.88480.12491.5556-0.02580.64360.0761-0.18230.09480.1028-0.4507-0.2532-0.02820.5214-0.16140.0250.93710.04630.437778.1276-67.8468-73.2827
321.2322-0.07280.04750.66240.60241.9344-0.2950.44040.4965-0.50220.26540.789-0.8137-1.40420.07171.12620.1847-0.26351.66460.21181.214448.1526-57.4412-81.4181
331.91030.45160.25491.77340.77721.865-0.15770.78470.1744-0.39820.06810.4944-0.2771-0.47350.04010.6321-0.079-0.07041.16350.05780.510371.8695-67.4022-76.4688
341.8809-0.10970.34952.55140.17281.8573-0.1660.9286-0.0146-0.48690.3314-0.1688-0.28240.2036-0.13340.4911-0.14490.00591.06530.00680.394384.1495-74.4898-75.4491
355.64086.5448-0.81158.3028-1.73651.5505-0.42930.744-1.451-0.66440.3414-1.32170.72990.6758-0.09580.5938-0.25950.00731.0371-0.34610.655786.1793-87.9802-74.1532
361.73281.0765-0.77371.7921-1.62982.41860.53660.7435-0.6276-0.42440.0424-0.41420.21871.3632-0.4710.8209-0.17170.04841.5796-0.30660.601881.6549-85.3136-87.7924
371.16580.7333-0.10812.7104-0.35981.7405-0.06790.4554-0.1344-0.16720.00320.1263-0.166-0.01760.10970.2613-0.00950.03680.6124-0.11250.373366.7066-85.6095-56.827
381.2352-0.1861-0.3262.40290.37081.8778-0.0948-0.0239-0.1579-0.3730.0925-0.0148-0.3356-0.1636-0.07490.4676-0.1073-0.03090.9805-0.0450.719537.3814-90.3656-63.1091
394.76631.4277-0.32623.5769-2.51955.47521.034-0.09010.18830.1818-0.33490.98980.3862-1.002-0.40670.6223-0.16740.01851.2163-0.32550.70832.1084-104.3128-57.6264
401.84921.4061-0.48582.4568-0.1331.6890.0390.4576-0.05790.07340.09160.29830.1047-0.3817-0.14150.297-0.0363-0.01860.639-0.12870.467160.8176-90.2993-57.8093
411.6269-0.466-0.02659.6994-2.30371.0807-0.31390.63640.12020.00230.67170.27880.0787-0.009-0.3790.4241-0.08310.03610.8325-0.12790.524471.282-87.7278-63.3587
424.81974.40660.71047.40530.48612.5170.3654-0.1874-0.52930.1073-0.5906-0.45110.10420.32510.21610.35750.04950.00950.5483-0.02420.469579.6442-91.4583-48.06
432.1372.1661-1.89752.3067-8.11518.7917-0.25850.4534-1.01990.2323-0.4242-1.16550.73851.35980.61780.408-0.12110.13950.5375-0.13570.827483.373-96.2574-49.6075
441.9790.0974-0.21953.3992-1.74995.2002-0.03130.9356-0.9264-0.30520.2146-0.63680.39060.249-0.04350.58990.00690.06820.8036-0.31050.726377.6319-105.2275-61.3968
451.8188-0.89720.48291.47550.81572.5049-0.07620.49620.3337-0.28270.2982-0.2682-0.6399-0.126-0.17660.7729-0.2430.18151.10690.16140.517399.6397-52.1199-76.9299
460.8198-0.28010.09850.83810.61270.8887-0.07020.27340.41430.08870.5930.6268-1.7752-0.8233-0.33791.64990.27270.0911.23770.43641.071179.9484-25.9542-76.513
472.1514-0.1180.20461.384-0.22793.0431-0.00430.90010.2819-0.46250.1143-0.0845-0.5756-0.1023-0.14720.8527-0.1790.10821.0180.16840.535897.4712-53.6171-84.2663
482.2379-0.0278-0.91251.8077-1.22254.97430.1789-0.1104-0.25180.0740.17060.1019-0.43320.0017-0.28020.8778-0.34040.14920.99630.030.643125.6325-51.7762-71.9028
492.63591.2390.45782.29170.74342.5720.3701-0.317-0.3235-0.1563-0.4563-0.9222-0.9423-0.0622-0.16270.961-0.35560.25420.79880.06960.8243125.4375-48.4982-70.9234
500.5485-0.4854-0.01960.2392-0.15870.5653-0.3536-0.01980.19380.73540.2642-0.1853-0.8686-0.08280.05692.1919-0.22160.360.82750.00761.2048118.8401-22.5069-59.4997
510.6287-0.67630.22221.9304-0.28291.88390.11520.52750.3466-0.59020.0302-0.5807-0.45810.4388-0.07831.0228-0.430.25191.33580.04420.8298126.0067-50.171-83.2328
521.64240.2293-0.49682.44580.04242.3172-0.0813-0.05130.03570.16450.07740.1533-0.0013-0.33090.0550.26090.0130.04740.3026-0.00950.210365.8544-85.6149-5.6008
531.36170.2546-3.01341.00780.17729.7660.664-1.0857-0.5332-0.01480.1562-0.16060.05360.5244-0.63410.66820.0119-0.06780.8550.18480.660371.4368-104.015123.2979
541.37930.2495-1.34731.7065-0.7442.91930.0414-0.3498-0.33410.40280.08180.22150.7429-0.1278-0.13540.8919-0.03350.01890.74010.17030.589959.6811-103.963424.1686
551.18690.26010.61752.5052-0.40690.8945-0.1050.3262-0.167-0.21320.12730.1176-0.3588-0.35020.19440.24590.05180.06060.4954-0.06020.443857.8582-87.6121-14.1636
562.4593-0.27460.80620.9263-0.00393.14830.0605-0.1086-0.14150.1481-0.1148-0.10320.02380.0630.10350.3506-0.0050.06840.26970.02960.283772.7065-85.6137-3.5687
574.27411.47343.14826.38024.2442.14320.36890.01590.49860.65490.365-0.5842-0.26121.4382-0.72250.5495-0.09510.02360.7044-0.08490.372881.6613-71.6396-6.0879
583.5531-1.8452-0.78583.41652.52673.14440.09120.14110.23990.15720.233-0.4592-0.25370.7054-0.24730.49380.0255-0.00530.69680.06760.561187.5306-83.7296-1.4092
590.12111.11760.60273.65270.80872.2257-0.0097-0.1090.15960.29460.0155-0.01350.04260.14880.0770.6398-0.1036-0.00391.1415-0.17490.7931131.2252-78.9838-54.3834
601.9380.45580.36462.59720.29982.85290.0161-0.1020.20430.01390.1196-0.2746-0.26350.97710.1260.6007-0.2682-0.03351.1783-0.14630.8823137.7021-68.251-57.8579
611.85710.1153.39329.1299-5.4369.75940.38960.37540.961-0.9805-0.1946-0.6935-0.13820.2525-0.59720.4719-0.33170.08971.1614-0.32610.8783141.4688-73.3762-68.2255
622.34170.1551-1.26751.85060.52654.5481-0.0143-0.0604-0.0425-0.21440.35870.22640.25320.6343-0.26450.6081-0.1759-0.04971.0523-0.03220.963139.6835-80.0201-60.9921
633.82570.1437-0.21461.7527-0.4752.6061-0.078-0.38850.05920.7790.02970.2337-0.691-0.25430.11130.72530.13950.03830.4558-0.04280.383660.5739-71.633716.516
641.99471.21030.4735.7269-0.16741.4705-0.3260.09780.4079-0.8708-0.015-0.3746-0.33830.20140.11310.69720.0236-0.0060.58310.1610.494759.5222-68.8932-4.0531
653.5745-1.7325-1.53922.8091-0.66077.99250.4922-0.1231-0.84380.6335-0.02211.62631.0858-0.6934-0.47620.7417-0.1208-0.0590.62890.10570.786449.4512-98.96618.2431
662.07030.24880.10211.5690.07543.5324-0.0981-0.28890.23030.18910.1913-0.2607-1.3272-0.23-0.06320.88150.09750.0770.4866-0.04230.38265.9099-67.76113.922
672.32420.3860.13311.6975-0.51541.0766-0.2237-0.10140.40790.6282-0.1218-0.4482-0.5082-0.80290.35111.1590.32960.10460.9641-0.10080.631351.5635-64.525219.148
681.4306-0.1914-0.34210.94120.50113.5046-0.1154-0.0784-0.27820.1723-0.2292-0.3118-0.5348-0.03440.33590.3095-0.0165-0.07510.3139-0.06350.556711.85561.3751-51.1268
691.7383-2.26870.16675.8921-2.45913.41350.21610.2933-0.1306-0.0058-0.14350.4936-0.1089-0.0147-0.0920.4406-0.0637-0.08440.3401-0.06490.38379.15143.2813-53.9791
702.6616-0.8824-0.58363.5639-1.08573.41830.05270.15250.3059-0.09970.29020.529-0.6958-1.092-0.19480.51820.11190.00450.7407-0.02380.6798-15.413112.4759-70.7613
714.7269-0.00651.82351.4539-0.42782.13170.12040.2198-0.0567-0.53370.1289-0.0080.0745-0.0233-0.19530.49810.02110.0530.3995-0.05870.4546-2.87434.6179-72.0058
721.60720.19260.47271.18740.39932.1005-0.0383-0.03760.05780.2245-0.0843-0.2159-0.1454-0.11020.12630.2881-0.0144-0.0420.2543-0.03420.507811.02044.9754-51.812
732.5164-0.996-3.02441.3792.30972.6933-0.0892-0.1790.1246-0.3988-0.0919-0.1897-0.79660.13180.2120.4269-0.0389-0.08940.46780.0240.724616.18278.1683-52.3026
743.4916-0.03412.6344.0835-1.34438.6172-0.05080.0592-0.5706-0.33220.4226-0.9323-0.02191.1419-0.01860.33880.05460.05840.4771-0.13310.644423.1128-8.1021-55.082
752.4728-0.2059-0.57256.66997.76842.14910.03480.325-0.02290.11110.7371-1.482-0.13811.5168-0.62510.374-0.05850.03660.46350.05990.545428.7285-6.3936-57.3645
761.4070.8841-0.74875.89062.3342.38170.18720.13780.1921-0.1180.0265-1.58650.02261.1146-0.13090.4995-0.02990.040.68690.06250.846628.27794.8175-66.6328
771.1992-0.0142-0.1542.076-0.34051.209-0.2129-0.46630.26910.0939-0.11140.2128-0.2832-0.28190.27980.70230.0787-0.32180.6178-0.1920.760632.502214.7324-8.6847
780.9481-0.1858-0.19321.48590.2283-0.0462-0.4004-1.13190.05760.81820.02731.0511-0.5-0.45210.31481.18630.34090.12571.7469-0.37981.12044.982916.79629.2623
791.5379-0.77370.50681.1179-0.49461.3279-0.2602-0.46190.38870.24770.03570.0408-0.4061-0.5180.27090.83690.0941-0.28770.8299-0.35010.824326.16618.0213-5.397
801.1275-0.970.7363.6198-1.40191.7559-0.8025-1.0787-0.0934-0.26881.00210.21770.02710.03340.16991.03390.0446-0.55740.638-0.57110.85538.514219.452-5.1144
810.7632-1.08310.21532.0434-0.01181.6703-0.201-0.33141.2992-0.12820.1818-0.6894-0.59980.16530.17860.97560.0399-0.43020.6259-0.16381.240538.40930.3632-18.2829
822.2156-0.5972-0.02921.7548-1.02861.5124-0.1575-0.35080.09520.46050.2085-0.2307-0.0978-0.0603-0.08840.6023-0.0289-0.24360.4276-0.08190.569117.366815.6219-30.4814
831.82981.2729-1.18323.3092-1.22711.91820.1194-0.2857-0.18841.8843-0.1732-0.3596-0.7228-0.4213-0.17660.89910.2386-0.0651.1356-0.09320.9109-5.778426.7784-22.7701
84-0.11110.84480.03143.7671-0.75091.2926-0.1704-0.1140.5190.40460.67581.145-0.8482-1.1855-0.18030.88750.2992-0.08931.11-0.00581.5115-15.328128.6575-31.7968
853.0567-1.22140.73932.2787-0.33820.90360.0362-0.4098-0.0629-0.0791-0.0120.5383-0.2603-0.2759-0.11620.61150.0768-0.19270.4788-0.16050.73654.283820.9584-36.9239
862.451-0.31971.64270.9935-0.2592.4346-0.0505-0.31570.1363-0.0150.14230.1259-0.2342-0.2620.010.52410.0441-0.12410.435-0.23750.713616.947119.228-28.0795
872.7464-0.26581.48542.4636-3.13714.7384-0.715-3.43420.89420.11590.0836-0.8878-0.7698-0.24570.10360.6882-0.1027-0.56-0.6242-0.48331.136522.900121.3923-28.4358
884.4682-3.04941.72184.8454-2.53454.3276-0.5357-0.12350.7758-0.1957-0.053-0.71160.1355-0.2330.47230.4926-0.1428-0.1010.465-0.06650.632328.601811.7726-41.8716
894.0839-0.25194.10973.2278-0.90492.0686-0.139-0.18150.4696-0.257-0.6308-0.4141-0.19421.14970.51250.5964-0.0136-0.14360.48670.07690.71732.310916.3425-45.8582
901.11690.10820.37964.54263.19714.12290.19540.11350.5459-0.2814-0.4507-0.8198-0.58110.21550.23440.6345-0.0656-0.17550.53260.05770.758227.687230.1723-44.4142
912.6662-0.1298-0.41451.85650.2272.7194-0.2788-0.15550.22980.2485-0.17780.03790.1781-0.20420.45190.6377-0.0276-0.22650.4894-0.13370.636455.07924.81622.0995
921.0471-0.16490.07091.2870.7240.6374-0.5518-0.6323-0.22441.0430.52780.41780.6301-0.56820.05251.3280.0430.13361.56980.11610.80336.827-10.98724.1247
932.6414-0.41311.06850.69740.20991.9316-0.3783-0.56050.25270.22940.06260.0726-0.186-0.53790.31220.82-0.0158-0.20340.7012-0.13660.629650.81174.17118.4111
943.3363-2.5197-1.72953.91962.11672.1448-1.7791-1.7648-0.9327-0.5518-0.673-0.63180.40772.0830.56170.4758-0.3281-0.89230.5315-0.63330.166361.98967.98175.4931
955.346-1.389-0.43591.34560.50862.82740.1038-0.3520.9281-0.669-0.19580.2761-1.2063-0.01220.05951.02570.0289-0.37410.4491-0.1330.952855.256122.6839-4.4022
965.825-0.90810.8161.6421-0.22641.99360.25691.43251.46651.0188-0.1992-0.2501-1.29471.018-0.02351.04590.1403-0.4690.5868-0.45511.169858.559525.580311.3391
971.9702-0.0427-0.46392.7185-0.37032.185-0.04640.447-0.0812-0.334-0.12440.22420.2550.36680.18710.6592-0.0559-0.20110.5926-0.12890.597779.7325-3.6781-3.6724
980.77550.0634-0.19721.38611.3131.0643-0.27520.0904-1.01930.1686-0.20170.28631.4728-0.13440.36541.5858-0.0930.16950.6774-0.07761.080671.4253-28.5739.8827
99-0.03350.0307-0.1894-0.0092-0.50652.8066-0.23120.45740.32570.04180.32070.01920.1372-0.4079-0.28210.7259-0.0093-0.11420.60920.03770.739579.43028.9089-20.3985
1001.3668-0.2771-0.20252.1496-0.22983.7337-0.01570.07840.2490.1101-0.1171-0.1543-0.30530.3820.13460.6284-0.0606-0.2510.5809-0.05180.680683.36015.81666.0929
1012.3258-0.1425-0.02872.65360.14152.2945-0.1680.0147-0.05070.13150.0686-0.1951-0.045-0.0720.07160.3331-0.0263-0.02980.2872-0.0770.34928.0142-21.6663-61.7057
1022.2122-0.79590.9022.8358-0.59864.6691-0.19340.0772-0.1268-0.5196-0.1735-0.4382-0.0405-0.2410.25230.3935-0.05490.08890.2159-0.0110.50257.0367-22.2218-65.9562
1032.37352.26871.76523.43151.69322.58710.17620.6167-0.5564-0.49720.0588-0.25460.41440.4205-0.09971.15680.0040.14760.7419-0.11390.61554.5453-34.4776-97.7616
1042.3299-0.3103-0.91871.334-1.23291.28990.37061.14740.0334-1.0603-0.0736-0.74490.52690.2802-0.20321.4301-0.03970.13491.0898-0.27790.78441.9747-33.3563-104.1739
1052.4951-0.86682.15921.6524-0.75983.94590.0380.54190.2844-1.06970.02930.2053-0.0917-0.1716-0.01330.9883-0.08790.0690.56930.01440.4966-6.2277-29.5438-93.1635
1061.3420.61240.04942.5073-0.33482.18140.0492-0.24960.0980.3766-0.23140.0228-0.0023-0.26250.17360.2462-0.0637-0.00250.416-0.03040.34331.1354-13.1442-57.3708
1071.32850.8631-0.0062.55691.30855.4902-0.07120.2862-0.2907-0.7397-0.0497-0.3795-0.22260.05120.0830.46630.0180.17210.3213-0.09720.641315.6113-28.897-76.8421
1082.5993-3.4842-0.67875.40832.6141.42960.0492-0.0753-0.0355-0.3876-0.0127-0.1841-0.20320.24280.04330.3503-0.06120.11710.4006-0.02090.45614.1185-17.1212-64.7179
1091.6424-0.7546-0.38624.53472.9327.2284-0.0853-0.3923-0.4556-0.1084-0.1142-0.58270.3414-0.3737-0.02510.3602-0.0229-0.02840.30020.09250.649917.2126-30.7482-54.4141
1103.1841-1.5313-0.60087.30612.68935.7041-0.3919-0.4854-0.45010.09220.6725-1.20330.44121.0926-0.19780.36080.02780.15560.461-0.09260.733823.928-32.4121-55.7355
1112.48781.49-0.23294.1481-0.47662.3550.1312-0.19-0.2099-0.0147-0.1584-0.46330.01340.6758-0.01880.50210.01120.11150.5902-0.07860.905828.5226-28.6431-68.1378
1122.5512-2.08910.33862.98240.44361.0510.0928-0.5874-0.69370.23830.1576-0.34260.79370.024-0.10610.62840.05430.04170.39880.09990.5933.6543-48.2951-61.229
1135.6166-4.00043.21676.8318-2.70974.2407-0.1203-0.4442-0.1172-0.21610.35110.1794-0.0897-0.2701-0.14570.6372-0.23160.15190.444-0.0960.4408-9.384-38.0523-62.5879
1143.0535-0.134-0.37852.0383-0.36014.3683-0.39880.3760.0175-0.60180.49410.0760.2147-0.1621-0.1880.6921-0.10710.05850.3317-0.01580.68791.1809-46.7247-74.9864
1151.6064-0.6727-0.25261.9474-1.16225.2956-0.17510.198-0.3232-0.09820.34070.22240.85310.0302-0.30150.8144-0.15730.12220.3385-0.04090.8388-0.6485-53.3681-68.9579
1164.1749-3.37152.16965.8638-4.18326.6403-0.5243-0.6390.05060.66560.2977-1.0407-0.0115-0.32690.17310.5735-0.0718-0.03760.3557-0.05490.50781.6195-32.9103-52.4969
1175.3781.3746-1.90272.1162.39245.4272-0.40250.73970.9251-1.89390.43070.7117-0.3688-0.4372-0.26530.7620.0956-0.02680.65250.07650.5061-12.417-22.5394-81.2648
1183.0439-2.8266-0.17686.1544-1.36510.9884-0.1853-0.1489-0.36870.36630.1280.3364-0.02010.04710.11770.343-0.13770.02830.4405-0.06880.3326-1.7122-38.5189-61.5708
1193.76774.5327-0.80445.2506-0.78280.16170.01210.6887-0.4311-0.35050.2247-1.00230.1934-0.2367-0.25451.06570.08940.23170.5948-0.17120.83027.5211-57.6953-72.7486
1207.2702-2.560.10673.0932-1.24550.8955-0.18770.49330.09140.3220.0296-0.53220.3111-0.12920.14610.6185-0.05780.13140.3088-0.01720.558.2155-40.0322-68.3896
1210.58280.13040.04450.62270.43820.77230.0519-0.5004-0.76270.5262-0.0602-0.05750.73590.00210.02181.03160.01940.01760.62840.13930.85671.2965-57.5767-55.2224
1220.6927-0.9356-0.34371.0238-0.08351.39330.4729-0.0377-0.2366-0.1604-0.31070.44970.32650.3826-0.10960.8174-0.1221-0.01090.43110.01140.6992-9.9607-50.2504-65.6045
1233.1768-0.2571-0.6833.0274-0.18173.03620.16010.48540.1166-0.5660.03890.43810.4432-0.8259-0.24950.7938-0.0082-0.11641.03230.16880.823676.3239-1.5132-43.6404
1241.9013-0.1129-0.34740.95680.78392.0408-0.18420.4017-0.07550.15830.114-0.37020.32410.15850.07570.7877-0.0128-0.14780.80890.06760.745189.3415-7.7531-34.0355
1254.7399-0.8274-1.02661.50660.13623.14980.2764-0.0355-0.55660.86570.06-0.80820.28930.2167-0.30970.83770.101-0.17250.73790.01550.763393.3739-3.9739-23.2352
1262.98390.6694-0.34011.5655-1.54253.12290.13510.32710.0013-0.45631.265-0.14190.3682-0.2129-0.65091.1268-0.29690.04540.9429-0.17010.950379.4611-16.7236-35.5664
1270.8142-1.8757-1.89438.2912-0.59842.06270.0908-0.46850.18841.22130.2409-0.28820.38380.787-0.08620.6881-0.0948-0.16481.11160.03910.621792.07962.8682-25.0771
1282.3690.51430.00594.99430.70982.5375-0.03960.63120.21690.04250.3563-0.4310.29130.2085-0.13420.67060.0465-0.08310.8923-0.02320.700890.16431.2843-34.8279
1291.80820.4565-0.63082.48841.252.670.0089-0.3213-0.19360.40130.12910.37080.2343-0.0952-0.06070.44180.04480.05450.36240.05910.393757.3928-86.56256.0606
1301.7438-0.063-0.62080.2793-0.76321.7660.07690.57090.36260.05470.17040.3403-0.1669-0.4811-0.10230.4335-0.01160.03460.5072-0.08580.43968.3125-70.1563-55.2096
1310.74191.3059-1.3954.1005-0.55523.9511-0.0219-0.80240.33570.12950.2910.3104-0.94650.597-0.38220.9092-0.29050.21230.8295-0.05861.0984122.007-45.2499-60.6602
1321.3841.0619-0.83791.47190.19691.1893-0.5066-0.54660.76250.47270.3158-0.3409-1.14531.02360.0881.0247-0.4956-0.1151.3053-0.220.9904138.693-64.8926-43.4707
1334.29190.7245-0.06810.1965-0.39171.09330.6349-0.5299-0.20560.3774-0.0839-1.46830.13590.4312-0.37661.4224-0.324-0.57912.121-0.12691.9533156.8382-68.705-41.7025
1344.32530.8676-1.43836.3175-1.64314.2680.1724-0.0414-0.1490.505-0.3406-0.8223-0.12431.22240.41850.8512-0.3666-0.19131.8367-0.30081.1731145.9053-73.6565-46.9642
1350.35590.91390.96831.5109-0.29340.528-0.0806-0.06990.0195-0.3719-0.02160.2328-0.0213-0.08080.05060.2883-0.0050.05180.2753-0.04490.393-2.6912-19.3266-66.062
1360.7994-0.55020.94160.3744-0.18191.5086-0.2256-0.62860.24280.0570.1661-0.1509-0.1106-0.35060.16540.5893-0.0943-0.07610.5688-0.09480.728835.08121.1203-10.2142
1370.3728-0.04060.14351.0631-0.45720.2557-0.486-1.0861-0.16670.72970.9631-0.1310.4297-0.6137-0.41511.60080.1534-0.15881.03710.14030.915485.7698-21.8272-23.9641
1382.98010.8334-1.36923.22390.44665.07960.0312-0.2114-1.01640.18550.3026-1.20671.40451.5003-0.08681.22620.2997-0.19451.2142-0.20811.237697.8265-17.413-40.4868
1392.25820.57520.70081.0223-0.3620.8701-0.17230.0232-0.7573-0.1391-0.01230.2960.5729-0.47420.06690.8878-0.37290.04970.8075-0.13340.9233-34.004-56.8816-66.1561
1402.40441.2492-0.58781.9023-0.74862.886-0.02640.04110.2622-0.1354-0.14630.5504-0.1717-0.78770.14560.53840.0048-0.05480.5748-0.12060.6832-36.1686-38.1091-67.2492
1412.96951.0211.14730.74091.00091.57620.4115-0.7695-0.17260.3558-0.44710.3013-0.0810.0096-0.04620.7505-0.15450.0270.7048-0.11550.6205-28.3399-44.0181-51.8397
1424.32342.2520.61483.86690.14541.68890.0528-0.2467-0.34990.3263-0.1332-0.12240.1906-0.50920.10920.5589-0.14460.07550.63290.02060.4596-11.2169-28.1454-38.3522
1433.1225-1.62270.53762.2404-1.48311.56110.8393-1.9313-1.92111.46940.7061-0.1499-0.0614-1.835-0.31660.54920.8851.77951.95930.2297-0.651829.6782-76.079425.5777
1440.7709-1.9528-0.65332.5521-0.121.3888-0.071-0.3093-0.35020.40870.29310.5922-0.2211-0.9724-0.17170.91870.16210.29671.70450.2330.800522.2054-80.16518.2973
1452.6448-0.8497-1.3320.8332-0.47213.116-0.1327-0.52730.17090.44180.38810.2749-0.6164-0.8603-0.19940.67960.29320.17810.94890.02430.660436.9723-64.8052-6.0278
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'W' and (resid 4 through 16 )
2X-RAY DIFFRACTION2chain 'W' and (resid 17 through 26 )
3X-RAY DIFFRACTION3chain 'W' and (resid 27 through 54 )
4X-RAY DIFFRACTION4chain 'W' and (resid 55 through 98 )
5X-RAY DIFFRACTION5chain 'W' and (resid 99 through 124 )
6X-RAY DIFFRACTION6chain 'W' and (resid 125 through 141 )
7X-RAY DIFFRACTION7chain 'W' and (resid 142 through 160 )
8X-RAY DIFFRACTION8chain 'V' and (resid 4 through 54 )
9X-RAY DIFFRACTION9chain 'V' and (resid 55 through 86 )
10X-RAY DIFFRACTION10chain 'V' and (resid 87 through 109 )
11X-RAY DIFFRACTION11chain 'V' and (resid 110 through 158 )
12X-RAY DIFFRACTION12chain 'K' and (resid 0 through 8 )
13X-RAY DIFFRACTION13chain 'K' and (resid 9 through 37 )
14X-RAY DIFFRACTION14chain 'K' and (resid 38 through 86 )
15X-RAY DIFFRACTION15chain 'K' and (resid 87 through 109 )
16X-RAY DIFFRACTION16chain 'K' and (resid 110 through 124 )
17X-RAY DIFFRACTION17chain 'K' and (resid 125 through 160 )
18X-RAY DIFFRACTION18chain 'J' and (resid 4 through 51 )
19X-RAY DIFFRACTION19chain 'J' and (resid 52 through 86 )
20X-RAY DIFFRACTION20chain 'J' and (resid 87 through 124 )
21X-RAY DIFFRACTION21chain 'J' and (resid 125 through 160 )
22X-RAY DIFFRACTION22chain 'F' and (resid 2 through 57 )
23X-RAY DIFFRACTION23chain 'F' and (resid 58 through 115 )
24X-RAY DIFFRACTION24chain 'F' and (resid 116 through 145 )
25X-RAY DIFFRACTION25chain 'F' and (resid 146 through 184 )
26X-RAY DIFFRACTION26chain 'F' and (resid 185 through 260 )
27X-RAY DIFFRACTION27chain 'F' and (resid 261 through 284 )
28X-RAY DIFFRACTION28chain 'F' and (resid 285 through 304 )
29X-RAY DIFFRACTION29chain 'F' and (resid 305 through 323 )
30X-RAY DIFFRACTION30chain 'F' and (resid 324 through 363 )
31X-RAY DIFFRACTION31chain 'D' and (resid 2 through 57 )
32X-RAY DIFFRACTION32chain 'D' and (resid 58 through 146 )
33X-RAY DIFFRACTION33chain 'D' and (resid 147 through 260 )
34X-RAY DIFFRACTION34chain 'D' and (resid 261 through 304 )
35X-RAY DIFFRACTION35chain 'D' and (resid 305 through 323 )
36X-RAY DIFFRACTION36chain 'D' and (resid 324 through 362 )
37X-RAY DIFFRACTION37chain 'E' and (resid 2 through 57 )
38X-RAY DIFFRACTION38chain 'E' and (resid 58 through 115 )
39X-RAY DIFFRACTION39chain 'E' and (resid 116 through 146 )
40X-RAY DIFFRACTION40chain 'E' and (resid 147 through 260 )
41X-RAY DIFFRACTION41chain 'E' and (resid 261 through 284 )
42X-RAY DIFFRACTION42chain 'E' and (resid 285 through 303 )
43X-RAY DIFFRACTION43chain 'E' and (resid 304 through 323 )
44X-RAY DIFFRACTION44chain 'E' and (resid 324 through 363 )
45X-RAY DIFFRACTION45chain 'C' and (resid 2 through 57 )
46X-RAY DIFFRACTION46chain 'C' and (resid 58 through 144 )
47X-RAY DIFFRACTION47chain 'C' and (resid 145 through 362 )
48X-RAY DIFFRACTION48chain 'B' and (resid 2 through 27 )
49X-RAY DIFFRACTION49chain 'B' and (resid 28 through 57 )
50X-RAY DIFFRACTION50chain 'B' and (resid 58 through 174 )
51X-RAY DIFFRACTION51chain 'B' and (resid 175 through 362 )
52X-RAY DIFFRACTION52chain 'G' and (resid 2 through 57 )
53X-RAY DIFFRACTION53chain 'G' and (resid 58 through 79 )
54X-RAY DIFFRACTION54chain 'G' and (resid 80 through 173 )
55X-RAY DIFFRACTION55chain 'G' and (resid 174 through 212 )
56X-RAY DIFFRACTION56chain 'G' and (resid 213 through 304 )
57X-RAY DIFFRACTION57chain 'G' and (resid 305 through 322 )
58X-RAY DIFFRACTION58chain 'G' and (resid 323 through 362 )
59X-RAY DIFFRACTION59chain 'A' and (resid 1 through 118 )
60X-RAY DIFFRACTION60chain 'A' and (resid 119 through 160 )
61X-RAY DIFFRACTION61chain 'A' and (resid 161 through 171 )
62X-RAY DIFFRACTION62chain 'A' and (resid 172 through 199 )
63X-RAY DIFFRACTION63chain 'H' and (resid 1 through 68 )
64X-RAY DIFFRACTION64chain 'H' and (resid 69 through 88 )
65X-RAY DIFFRACTION65chain 'H' and (resid 89 through 103 )
66X-RAY DIFFRACTION66chain 'H' and (resid 104 through 183 )
67X-RAY DIFFRACTION67chain 'H' and (resid 184 through 219 )
68X-RAY DIFFRACTION68chain 'R' and (resid 2 through 27 )
69X-RAY DIFFRACTION69chain 'R' and (resid 28 through 57 )
70X-RAY DIFFRACTION70chain 'R' and (resid 58 through 145 )
71X-RAY DIFFRACTION71chain 'R' and (resid 146 through 184 )
72X-RAY DIFFRACTION72chain 'R' and (resid 185 through 260 )
73X-RAY DIFFRACTION73chain 'R' and (resid 261 through 284 )
74X-RAY DIFFRACTION74chain 'R' and (resid 285 through 303 )
75X-RAY DIFFRACTION75chain 'R' and (resid 304 through 322 )
76X-RAY DIFFRACTION76chain 'R' and (resid 323 through 363 )
77X-RAY DIFFRACTION77chain 'P' and (resid 2 through 57 )
78X-RAY DIFFRACTION78chain 'P' and (resid 58 through 145 )
79X-RAY DIFFRACTION79chain 'P' and (resid 146 through 260 )
80X-RAY DIFFRACTION80chain 'P' and (resid 261 through 284 )
81X-RAY DIFFRACTION81chain 'P' and (resid 285 through 362 )
82X-RAY DIFFRACTION82chain 'Q' and (resid 2 through 57 )
83X-RAY DIFFRACTION83chain 'Q' and (resid 58 through 79 )
84X-RAY DIFFRACTION84chain 'Q' and (resid 80 through 146 )
85X-RAY DIFFRACTION85chain 'Q' and (resid 147 through 195 )
86X-RAY DIFFRACTION86chain 'Q' and (resid 196 through 260 )
87X-RAY DIFFRACTION87chain 'Q' and (resid 261 through 284 )
88X-RAY DIFFRACTION88chain 'Q' and (resid 285 through 304 )
89X-RAY DIFFRACTION89chain 'Q' and (resid 305 through 322 )
90X-RAY DIFFRACTION90chain 'Q' and (resid 323 through 362 )
91X-RAY DIFFRACTION91chain 'O' and (resid 2 through 57 )
92X-RAY DIFFRACTION92chain 'O' and (resid 58 through 145 )
93X-RAY DIFFRACTION93chain 'O' and (resid 146 through 260 )
94X-RAY DIFFRACTION94chain 'O' and (resid 261 through 284 )
95X-RAY DIFFRACTION95chain 'O' and (resid 285 through 323 )
96X-RAY DIFFRACTION96chain 'O' and (resid 324 through 362 )
97X-RAY DIFFRACTION97chain 'N' and (resid 2 through 57 )
98X-RAY DIFFRACTION98chain 'N' and (resid 58 through 184 )
99X-RAY DIFFRACTION99chain 'N' and (resid 185 through 206 )
100X-RAY DIFFRACTION100chain 'N' and (resid 207 through 362 )
101X-RAY DIFFRACTION101chain 'S' and (resid 2 through 27 )
102X-RAY DIFFRACTION102chain 'S' and (resid 28 through 57 )
103X-RAY DIFFRACTION103chain 'S' and (resid 58 through 84 )
104X-RAY DIFFRACTION104chain 'S' and (resid 85 through 112 )
105X-RAY DIFFRACTION105chain 'S' and (resid 113 through 173 )
106X-RAY DIFFRACTION106chain 'S' and (resid 174 through 222 )
107X-RAY DIFFRACTION107chain 'S' and (resid 223 through 260 )
108X-RAY DIFFRACTION108chain 'S' and (resid 261 through 284 )
109X-RAY DIFFRACTION109chain 'S' and (resid 285 through 304 )
110X-RAY DIFFRACTION110chain 'S' and (resid 305 through 322 )
111X-RAY DIFFRACTION111chain 'S' and (resid 323 through 362 )
112X-RAY DIFFRACTION112chain 'T' and (resid 1 through 19 )
113X-RAY DIFFRACTION113chain 'T' and (resid 20 through 32 )
114X-RAY DIFFRACTION114chain 'T' and (resid 33 through 50 )
115X-RAY DIFFRACTION115chain 'T' and (resid 51 through 68 )
116X-RAY DIFFRACTION116chain 'T' and (resid 69 through 89 )
117X-RAY DIFFRACTION117chain 'T' and (resid 90 through 102 )
118X-RAY DIFFRACTION118chain 'T' and (resid 103 through 122 )
119X-RAY DIFFRACTION119chain 'T' and (resid 123 through 138 )
120X-RAY DIFFRACTION120chain 'T' and (resid 139 through 157 )
121X-RAY DIFFRACTION121chain 'T' and (resid 158 through 196 )
122X-RAY DIFFRACTION122chain 'T' and (resid 197 through 219 )
123X-RAY DIFFRACTION123chain 'M' and (resid 1 through 65 )
124X-RAY DIFFRACTION124chain 'M' and (resid 66 through 118 )
125X-RAY DIFFRACTION125chain 'M' and (resid 119 through 143 )
126X-RAY DIFFRACTION126chain 'M' and (resid 144 through 160 )
127X-RAY DIFFRACTION127chain 'M' and (resid 161 through 171 )
128X-RAY DIFFRACTION128chain 'M' and (resid 172 through 199 )
129X-RAY DIFFRACTION129chain 'L' and (resid 1 through 10 )
130X-RAY DIFFRACTION130chain 'L' and (resid 11 through 35 )
131X-RAY DIFFRACTION131chain 'L' and (resid 36 through 40 )
132X-RAY DIFFRACTION132chain 'L' and (resid 41 through 50 )
133X-RAY DIFFRACTION133chain 'L' and (resid 51 through 55 )
134X-RAY DIFFRACTION134chain 'L' and (resid 56 through 60 )
135X-RAY DIFFRACTION135chain 'X' and (resid 1 through 15 )
136X-RAY DIFFRACTION136chain 'X' and (resid 16 through 40 )
137X-RAY DIFFRACTION137chain 'X' and (resid 41 through 45 )
138X-RAY DIFFRACTION138chain 'X' and (resid 46 through 60 )
139X-RAY DIFFRACTION139chain 'U' and (resid 3 through 84 )
140X-RAY DIFFRACTION140chain 'U' and (resid 85 through 328 )
141X-RAY DIFFRACTION141chain 'U' and (resid 329 through 375 )
142X-RAY DIFFRACTION142chain 'U' and (resid 376 through 496 )
143X-RAY DIFFRACTION143chain 'I' and (resid 3 through 153 )
144X-RAY DIFFRACTION144chain 'I' and (resid 154 through 278 )
145X-RAY DIFFRACTION145chain 'I' and (resid 279 through 496 )

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more