[English] 日本語
Yorodumi- PDB-5cpz: Crystal structure of murine polyomavirus RA strain VP1 in complex... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5cpz | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | Crystal structure of murine polyomavirus RA strain VP1 in complex with the GT1a glycan | |||||||||
Components | Capsid protein VP1 | |||||||||
Keywords | VIRAL PROTEIN / Murine Polyomavirus / Virus protein / carbohydrate complex / virus-host interaction | |||||||||
Function / homology | Function and homology information caveolin-mediated endocytosis of virus by host cell / T=7 icosahedral viral capsid / host cell nucleus / virion attachment to host cell / structural molecule activity Similarity search - Function | |||||||||
Biological species | Murine polyomavirus | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.71 Å | |||||||||
Authors | Buch, M.H.C. / Liaci, A.M. / Neu, U. / Stehle, T. | |||||||||
Funding support | Germany, 1items
| |||||||||
Citation | Journal: Plos Pathog. / Year: 2015 Title: Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity. Authors: Buch, M.H. / Liaci, A.M. / O'Hara, S.D. / Garcea, R.L. / Neu, U. / Stehle, T. | |||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 5cpz.cif.gz | 610.4 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb5cpz.ent.gz | 504.4 KB | Display | PDB format |
PDBx/mmJSON format | 5cpz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5cpz_validation.pdf.gz | 2.6 MB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 5cpz_full_validation.pdf.gz | 2.7 MB | Display | |
Data in XML | 5cpz_validation.xml.gz | 73.4 KB | Display | |
Data in CIF | 5cpz_validation.cif.gz | 110.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cp/5cpz ftp://data.pdbj.org/pub/pdb/validation_reports/cp/5cpz | HTTPS FTP |
-Related structure data
Related structure data | 5cpuC 5cpwC 5cpxC 5cpyC 5cq0C 1vpnS S: Starting model for refinement C: citing same article (ref.) |
---|---|
Similar structure data |
-Links
-Assembly
Deposited unit |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit cell |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components on special symmetry positions |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1 / Refine code: 6
|