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Yorodumi- PDB-5cpx: Crystal structure of murine polyomavirus PTA strain VP1 in comple... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 5cpx | |||||||||
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| Title | Crystal structure of murine polyomavirus PTA strain VP1 in complex with the DSLNT glycan | |||||||||
Components | VP1 | |||||||||
Keywords | VIRAL PROTEIN / Murine Polyomavirus / Virus protein / carbohydrate complex / virus-host interaction | |||||||||
| Function / homology | Function and homology informationcaveolin-mediated endocytosis of virus by host cell / T=7 icosahedral viral capsid / endocytosis involved in viral entry into host cell / virion attachment to host cell / host cell nucleus / structural molecule activity Similarity search - Function | |||||||||
| Biological species | Murine polyomavirus | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.87 Å | |||||||||
Authors | Buch, M.H.C. / Liaci, A.M. / Neu, U. / Stehle, T. | |||||||||
| Funding support | Germany, 1items
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Citation | Journal: Plos Pathog. / Year: 2015Title: Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity. Authors: Buch, M.H. / Liaci, A.M. / O'Hara, S.D. / Garcea, R.L. / Neu, U. / Stehle, T. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5cpx.cif.gz | 583 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5cpx.ent.gz | 478.2 KB | Display | PDB format |
| PDBx/mmJSON format | 5cpx.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5cpx_validation.pdf.gz | 2.2 MB | Display | wwPDB validaton report |
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| Full document | 5cpx_full_validation.pdf.gz | 2.1 MB | Display | |
| Data in XML | 5cpx_validation.xml.gz | 66.8 KB | Display | |
| Data in CIF | 5cpx_validation.cif.gz | 100.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cp/5cpx ftp://data.pdbj.org/pub/pdb/validation_reports/cp/5cpx | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5cpuSC ![]() 5cpwC ![]() 5cpyC ![]() 5cpzC ![]() 5cq0C S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Unit cell |
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| Components on special symmetry positions |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1 / Refine code: 6
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About Yorodumi



Murine polyomavirus
X-RAY DIFFRACTION
Germany, 1items
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