Entry Database : PDB / ID : 5avn Structure visualization Downloads & linksTitle The 1.03 angstrom structure (P212121) of glucose isomerase crystallized in high-strength agarose hydrogel ComponentsXylose isomerase Details Keywords ISOMERASE / Xylose isomerase / hydrogelFunction / homology Function and homology informationFunction Domain/homology Component
xylose isomerase / D-xylose metabolic process / xylose isomerase activity / magnesium ion binding / identical protein binding / cytoplasm Similarity search - Function Xylose isomerase, actinobacteria / : / Xylose isomerase / Xylose isomerase family profile. / Divalent-metal-dependent TIM barrel enzymes / Xylose isomerase-like, TIM barrel domain / Xylose isomerase-like TIM barrel / Xylose isomerase-like superfamily / TIM Barrel / Alpha-Beta Barrel / Alpha Beta Similarity search - Domain/homologyBiological species Streptomyces rubiginosus (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 1.03 Å DetailsAuthors Sugiyama, S. / Shimizu, N. / Maruyama, N. / Sazaki, G. / Adachi, H. / Takano, K. / Murakami, S. / Inoue, T. / Mori, Y. / Matsumura, H. Funding support Japan, 3items Details Hide detailsOrganization Grant number Country JSPS KAKENHI 23860028 Japan JSPS KAKENHI 25650051 Japan JSPS KAKENHI 25286051 Japan
CitationJournal : J.Am.Chem.Soc. / Year : 2012Title : Growth of protein crystals in hydrogels prevents osmotic shockAuthors : Sugiyama, S. / Maruyama, M. / Sazaki, G. / Hirose, M. / Adachi, H. / Takano, K. / Murakami, S. / Inoue, T. / Mori, Y. / Matsumura, H. History Deposition Jun 23, 2015 Deposition site : PDBJ / Processing site : PDBJRevision 1.0 Jul 8, 2015 Provider : repository / Type : Initial releaseRevision 1.1 Feb 26, 2020 Group : Advisory / Data collection ... Advisory / Data collection / Derived calculations / Source and taxonomy Category : diffrn_source / entity_src_gen ... diffrn_source / entity_src_gen / pdbx_prerelease_seq / pdbx_struct_assembly / pdbx_struct_assembly_gen / pdbx_struct_assembly_prop / pdbx_struct_oper_list / pdbx_validate_close_contact / pdbx_validate_symm_contact Item : _diffrn_source.pdbx_synchrotron_site / _entity_src_gen.pdbx_alt_source_flag ... _diffrn_source.pdbx_synchrotron_site / _entity_src_gen.pdbx_alt_source_flag / _pdbx_struct_assembly.oligomeric_details / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_assembly_prop.type / _pdbx_struct_assembly_prop.value / _pdbx_struct_oper_list.symmetry_operation Revision 1.2 Nov 8, 2023 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id
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