- PDB-5aek: Crystal structure of the human SENP2 C548S in complex with the hu... -
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基本情報
登録情報
データベース: PDB / ID: 5aek
タイトル
Crystal structure of the human SENP2 C548S in complex with the human SUMO1 K48M F66W
要素
SENTRIN-SPECIFIC PROTEASE 2
SMALL UBIQUITIN-RELATED MODIFIER 1
キーワード
HYDROLASE / SUMO / SENP / FOLDING EVOLUTION
機能・相同性
機能・相同性情報
SUMO-specific endopeptidase activity / protein localization to nuclear pore / negative regulation of transcription by transcription factor localization / SUMOylation of nuclear envelope proteins / Negative regulation of activity of TFAP2 (AP-2) family transcription factors / SUMO is proteolytically processed / negative regulation of delayed rectifier potassium channel activity / SUMO is conjugated to E1 (UBA2:SAE1) / deSUMOylase activity / nuclear stress granule ...SUMO-specific endopeptidase activity / protein localization to nuclear pore / negative regulation of transcription by transcription factor localization / SUMOylation of nuclear envelope proteins / Negative regulation of activity of TFAP2 (AP-2) family transcription factors / SUMO is proteolytically processed / negative regulation of delayed rectifier potassium channel activity / SUMO is conjugated to E1 (UBA2:SAE1) / deSUMOylase activity / nuclear stress granule / protein desumoylation / PML body organization / SUMO is transferred from E1 to E2 (UBE2I, UBC9) / negative regulation of action potential / small protein activating enzyme binding / septin ring / regulation of calcium ion transmembrane transport / SUMOylation of DNA methylation proteins / SUMOylation of immune response proteins / XY body / SUMOylation of SUMOylation proteins / Maturation of nucleoprotein / regulation of Wnt signaling pathway / SUMOylation of RNA binding proteins / regulation of cardiac muscle cell contraction / Postmitotic nuclear pore complex (NPC) reformation / Maturation of nucleoprotein / negative regulation of protein import into nucleus / roof of mouth development / SUMOylation of ubiquitinylation proteins / ubiquitin-specific protease binding / fat cell differentiation / negative regulation of DNA binding / ubiquitin-like protein ligase binding / SUMOylation of DNA replication proteins / transcription factor binding / SUMOylation of transcription factors / protein sumoylation / potassium channel regulator activity / mRNA transport / SUMOylation of DNA damage response and repair proteins / Regulation of IFNG signaling / nuclear pore / negative regulation of protein ubiquitination / cellular response to cadmium ion / SUMOylation of chromatin organization proteins / SUMOylation of transcription cofactors / positive regulation of protein ubiquitination / SUMOylation of intracellular receptors / protein destabilization / positive regulation of protein-containing complex assembly / PKR-mediated signaling / negative regulation of DNA-binding transcription factor activity / PML body / Wnt signaling pathway / Formation of Incision Complex in GG-NER / protein tag activity / regulation of protein localization / protein transport / positive regulation of proteasomal ubiquitin-dependent protein catabolic process / Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks / cellular response to heat / nuclear membrane / 加水分解酵素; プロテアーゼ; ペプチド結合加水分解酵素; システインプロテアーゼ / nuclear body / protein stabilization / nuclear speck / DNA repair / negative regulation of DNA-templated transcription / ubiquitin protein ligase binding / nucleolus / enzyme binding / proteolysis / RNA binding / nucleoplasm / nucleus / plasma membrane / cytosol 類似検索 - 分子機能
解像度: 3→47 Å / Cor.coef. Fo:Fc: 0.893 / Cor.coef. Fo:Fc free: 0.835 / SU B: 24.349 / SU ML: 0.457 / 交差検証法: THROUGHOUT / ESU R Free: 0.552 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
Rfactor
反射数
%反射
Selection details
Rfree
0.32625
3167
3.1 %
RANDOM
Rwork
0.25688
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-
-
obs
0.25935
97738
97.74 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK