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- PDB-4xwo: Structure of Get3 bound to the transmembrane domain of Sec22 -

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基本情報

登録情報
データベース: PDB / ID: 4xwo
タイトルStructure of Get3 bound to the transmembrane domain of Sec22
要素
  • ATPase GET3
  • Antibody heavy chain
  • Antibody light chain
  • Sec22
キーワードHYDROLASE/TRANSPORT PROTEIN / membrane protein targeting complex / HYDROLASE-TRANSPORT PROTEIN complex
機能・相同性
機能・相同性情報


GET complex / pheromone-dependent signal transduction involved in conjugation with cellular fusion / tail-anchored membrane protein insertion into ER membrane / 加水分解酵素; 酸無水物に作用 / protein insertion into ER membrane / post-translational protein targeting to endoplasmic reticulum membrane / retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum / response to arsenic-containing substance / response to metal ion / protein folding chaperone ...GET complex / pheromone-dependent signal transduction involved in conjugation with cellular fusion / tail-anchored membrane protein insertion into ER membrane / 加水分解酵素; 酸無水物に作用 / protein insertion into ER membrane / post-translational protein targeting to endoplasmic reticulum membrane / retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum / response to arsenic-containing substance / response to metal ion / protein folding chaperone / guanyl-nucleotide exchange factor activity / unfolded protein binding / response to heat / cellular response to oxidative stress / endoplasmic reticulum membrane / endoplasmic reticulum / Golgi apparatus / ATP hydrolysis activity / ATP binding / metal ion binding / identical protein binding / cytosol
類似検索 - 分子機能
Arsenical pump ATPase, ArsA/GET3, eukaryotic / Arsenical pump ATPase, ArsA/GET3 / Anion-transporting ATPase-like domain / Anion-transporting ATPase / P-loop containing nucleotide triphosphate hydrolases / Immunoglobulins / Immunoglobulin-like / Sandwich / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase ...Arsenical pump ATPase, ArsA/GET3, eukaryotic / Arsenical pump ATPase, ArsA/GET3 / Anion-transporting ATPase-like domain / Anion-transporting ATPase / P-loop containing nucleotide triphosphate hydrolases / Immunoglobulins / Immunoglobulin-like / Sandwich / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / 3-Layer(aba) Sandwich / Mainly Beta / Alpha Beta
類似検索 - ドメイン・相同性
ADENOSINE-5'-DIPHOSPHATE / ADENOSINE-5'-TRIPHOSPHATE / ATPase GET3
類似検索 - 構成要素
生物種Saccharomyces cerevisiae (パン酵母)
HOMO SAPIENS (ヒト)
synthetic construct (人工物)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.75 Å
データ登録者Mateja, A. / Paduch, M. / Chang, H.-Y. / Szydlowska, A. / Kossiakoff, A.A. / Hegde, R.S. / Keenan, R.J.
資金援助 米国, 3件
組織認可番号国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01 GM086487 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)U01 GM094588 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)U54 GM087519 米国
引用ジャーナル: Science / 年: 2015
タイトル: Protein targeting. Structure of the Get3 targeting factor in complex with its membrane protein cargo.
著者: Mateja, A. / Paduch, M. / Chang, H.Y. / Szydlowska, A. / Kossiakoff, A.A. / Hegde, R.S. / Keenan, R.J.
履歴
登録2015年1月29日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02015年3月25日Provider: repository / タイプ: Initial release
改定 1.12017年9月20日Group: Author supporting evidence / Database references ...Author supporting evidence / Database references / Derived calculations / Source and taxonomy
カテゴリ: citation / entity_src_gen ...citation / entity_src_gen / pdbx_audit_support / pdbx_struct_oper_list
Item: _citation.journal_id_CSD / _entity_src_gen.pdbx_alt_source_flag ..._citation.journal_id_CSD / _entity_src_gen.pdbx_alt_source_flag / _pdbx_audit_support.funding_organization / _pdbx_struct_oper_list.symmetry_operation
改定 1.22019年12月25日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.32023年9月27日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_conn_type / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_alt_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_alt_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.value / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_ptnr2_label_alt_id / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id
改定 2.02024年12月25日Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Structure summary
カテゴリ: atom_site / pdbx_entry_details ...atom_site / pdbx_entry_details / pdbx_modification_feature / pdbx_nonpoly_scheme / pdbx_struct_conn_angle / pdbx_validate_close_contact / struct_conn / struct_site / struct_site_gen
Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _pdbx_entry_details.has_protein_modification / _pdbx_nonpoly_scheme.asym_id / _pdbx_nonpoly_scheme.auth_seq_num / _pdbx_nonpoly_scheme.ndb_seq_num / _pdbx_nonpoly_scheme.pdb_seq_num / _pdbx_nonpoly_scheme.pdb_strand_id / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_alt_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_alt_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.value / _struct_site.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_seq_id / _struct_site_gen.auth_asym_id / _struct_site_gen.auth_seq_id / _struct_site_gen.label_asym_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: ATPase GET3
B: ATPase GET3
C: Antibody heavy chain
D: Antibody light chain
E: Antibody heavy chain
F: Antibody light chain
G: ATPase GET3
H: ATPase GET3
I: Antibody heavy chain
J: Antibody light chain
K: Antibody heavy chain
L: Antibody light chain
M: ATPase GET3
N: ATPase GET3
O: Antibody heavy chain
P: Antibody light chain
Q: Antibody heavy chain
R: Antibody light chain
S: ATPase GET3
T: ATPase GET3
U: Antibody heavy chain
V: Antibody light chain
W: Antibody heavy chain
X: Antibody light chain
a: Sec22
g: Sec22
m: Sec22
s: Sec22
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)722,95556
ポリマ－715,02428
非ポリマー7,93128
水7,656425
1
A: ATPase GET3
B: ATPase GET3
C: Antibody heavy chain
D: Antibody light chain
E: Antibody heavy chain
F: Antibody light chain
a: Sec22
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)180,73914
ポリマ－178,7567
非ポリマー1,9837
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
2
G: ATPase GET3
H: ATPase GET3
I: Antibody heavy chain
J: Antibody light chain
K: Antibody heavy chain
L: Antibody light chain
g: Sec22
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)180,73914
ポリマ－178,7567
非ポリマー1,9837
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
3
M: ATPase GET3
N: ATPase GET3
O: Antibody heavy chain
P: Antibody light chain
Q: Antibody heavy chain
R: Antibody light chain
m: Sec22
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)180,73914
ポリマ－178,7567
非ポリマー1,9837
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
4
S: ATPase GET3
T: ATPase GET3
U: Antibody heavy chain
V: Antibody light chain
W: Antibody heavy chain
X: Antibody light chain
s: Sec22
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)180,73914
ポリマ－178,7567
非ポリマー1,9837
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)112.580, 119.450, 147.570
Angle α, β, γ (deg.)71.890, 89.860, 66.610
Int Tables number1
Space group name H-MP1
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11chain A
21chain B
31chain G
41chain H
51chain M
61chain N
71chain S
81chain T
12chain C
22chain E
32chain I
42chain K
52chain O
62chain Q
72chain U
82chain W
13chain D
23chain F
33chain J
43chain L
53chain P
63chain R
73chain V
83chain X
14chain a
24chain m
34chain s

NCSドメイン領域:

Component-ID: 1

Dom-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11THRTHRLEULEUchain AAA4 - 3504 - 350
21THRTHRASPASPchain BBB4 - 3524 - 352
31THRTHRLEULEUchain GGG4 - 3504 - 350
41VALVALASPASPchain HHH5 - 3525 - 352
51THRTHRLEULEUchain MMM4 - 3504 - 350
61ASPASPASPASPchain NNN2 - 3522 - 352
71THRTHRLEULEUchain SSS4 - 3504 - 350
81ASPASPGLUGLUchain TTT2 - 3512 - 351
12GLUGLUCYSCYSchain CCC4 - 2254 - 225
22GLUGLUCYSCYSchain EEE4 - 2254 - 225
32GLUGLUCYSCYSchain III1 - 2251 - 225
42VALVALCYSCYSchain KKK5 - 2255 - 225
52SERSERCYSCYSchain OOO3 - 2253 - 225
62VALVALCYSCYSchain QQQ5 - 2255 - 225
72GLUGLUCYSCYSchain UUU4 - 2254 - 225
82VALVALCYSCYSchain WWW5 - 2255 - 225
13ASPASPCYSCYSchain DDD2 - 2172 - 217
23ILEILECYSCYSchain FFF3 - 2173 - 217
33ILEILECYSCYSchain JJJ3 - 2173 - 217
43ILEILECYSCYSchain LLL3 - 2173 - 217
53ASPASPCYSCYSchain PPP2 - 2172 - 217
63ASPASPCYSCYSchain RRR2 - 2172 - 217
73ILEILECYSCYSchain VVV3 - 2173 - 217
83ASPASPCYSCYSchain XXX2 - 2172 - 217
14UNKUNKUNKUNKchain aaY1 - 201 - 20
24UNKUNKUNKUNKchain mmAA2 - 201 - 19
34UNKUNKUNKUNKchain ssBA0 - 201 - 21

NCSアンサンブル:
ID
1
2
3
4

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要素

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抗体 , 2種, 16分子 CEIKOQUWDFJLPRVX

#2: 抗体
Antibody heavy chain


分子量: 24560.430 Da / 分子数: 8 / 由来タイプ: 組換発現 / 由来: (組換発現) HOMO SAPIENS, synthetic construct
解説: OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG ANTIBODY FRAGMENT, THE CDRS ARE COMPLETELY SYNTHETIC
プラスミド: RH2.2 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3)/PRIL
#3: 抗体
Antibody light chain


分子量: 23671.266 Da / 分子数: 8 / 由来タイプ: 組換発現 / 由来: (組換発現) HOMO SAPIENS, synthetic construct
解説: OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG ANTIBODY FRAGMENT, THE CDRS ARE COMPLETELY SYNTHETIC
プラスミド: RH2.2 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3)/PRIL

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タンパク質 / タンパク質・ペプチド , 2種, 12分子 ABGHMNSTagms

#1: タンパク質
ATPase GET3 / Arsenical pump-driving ATPase / Arsenite-stimulated ATPase / Golgi to ER traffic protein 3 / Guided ...Arsenical pump-driving ATPase / Arsenite-stimulated ATPase / Golgi to ER traffic protein 3 / Guided entry of tail-anchored proteins 3


分子量: 39392.605 Da / 分子数: 8 / 変異: D57N / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (ATCC 204508 / S288c) (パン酵母)
株: ATCC 204508 / S288c / 遺伝子: GET3, ARR4, YDL100C, D2371 / プラスミド: pCDF1b / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3)/pRIL
参照: UniProt: Q12154, 加水分解酵素; 酸無水物に作用
#4: タンパク質・ペプチド
Sec22


分子量: 3507.314 Da / 分子数: 4 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (パン酵母)
プラスミド: pET28 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3)/pRIL

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非ポリマー , 5種, 453分子

#5: 化合物
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 8 / 由来タイプ: 合成 / 式: Mg
#6: 化合物
ChemComp-ZN / ZINC ION


分子量: 65.409 Da / 分子数: 4 / 由来タイプ: 合成 / 式: Zn
#7: 化合物
ChemComp-ADP / ADENOSINE-5'-DIPHOSPHATE / ADP


分子量: 427.201 Da / 分子数: 8 / 由来タイプ: 合成 / 式: C10H15N5O10P2 / コメント: ADP, エネルギー貯蔵分子*YM
#8: 化合物
ChemComp-ATP / ADENOSINE-5'-TRIPHOSPHATE / ATP


分子量: 507.181 Da / 分子数: 8 / 由来タイプ: 天然 / 式: C10H16N5O13P3 / コメント: ATP, エネルギー貯蔵分子*YM
#9: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 425 / 由来タイプ: 天然 / 式: H2O

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詳細

Has protein modificationY
配列の詳細The sequence of the bound peptide is:MGSHHHHHHSKINFDLLISQYAPIVIVAFFFVFLFWWIFLK However, due to ...The sequence of the bound peptide is:MGSHHHHHHSKINFDLLISQYAPIVIVAFFFVFLFWWIFLK However, due to relatively poor local density, this chain was modeled as a poly-alanine helix

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.4 Å3/Da / 溶媒含有率: 48.7 %
結晶化温度: 298 K / 手法: 蒸気拡散法, ハンギングドロップ法 / 詳細: 13% PEG 3350, 25 mM succinic acid pH 7.0

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: APS / ビームライン: 24-ID-C / 波長: 0.9795 Å
検出器タイプ: DECTRIS PILATUS 6M-F / 検出器: PIXEL / 日付: 2014年3月10日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.9795 Å / 相対比: 1
反射解像度: 2.75→39.723 Å / Num. obs: 157053 / % possible obs: 91 % / 冗長度: 1.7 % / Net I/σ(I): 8.2
反射 シェル解像度: 2.75→2.85 Å / 冗長度: 1.7 % / Mean I/σ(I) obs: 1.4 / % possible all: 89

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解析

ソフトウェア
名称分類
PHENIX精密化
xia2データ削減
Cootモデル構築
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: 2woj, 3pgf

2woj

3pgf


解像度: 2.75→39.723 Å / SU ML: 0.42 / 交差検証法: FREE R-VALUE / σ(F): 1.97 / 位相誤差: 28.91 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2472 7818 5 %
Rwork0.1956 148484 -
obs0.1983 156302 90.62 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 278.83 Å2 / Biso mean: 75.163 Å2 / Biso min: 17.19 Å2
精密化ステップサイクル: final / 解像度: 2.75→39.723 Å
タンパク質核酸リガンド溶媒全体
原子数45612 0 660 425 46697
Biso mean--50.44 51.43 -
残基数----5938
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.00547135
X-RAY DIFFRACTIONf_angle_d0.80663950
X-RAY DIFFRACTIONf_chiral_restr0.0317267
X-RAY DIFFRACTIONf_plane_restr0.0048057
X-RAY DIFFRACTIONf_dihedral_angle_d12.30717009
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDRmsタイプ
11A11615X-RAY DIFFRACTION10.585TORSIONAL
12B11615X-RAY DIFFRACTION10.585TORSIONAL
13G11615X-RAY DIFFRACTION10.585TORSIONAL
14H11615X-RAY DIFFRACTION10.585TORSIONAL
15M11615X-RAY DIFFRACTION10.585TORSIONAL
16N11615X-RAY DIFFRACTION10.585TORSIONAL
17S11615X-RAY DIFFRACTION10.585TORSIONAL
18T11615X-RAY DIFFRACTION10.585TORSIONAL
21C7964X-RAY DIFFRACTION10.585TORSIONAL
22E7964X-RAY DIFFRACTION10.585TORSIONAL
23I7964X-RAY DIFFRACTION10.585TORSIONAL
24K7964X-RAY DIFFRACTION10.585TORSIONAL
25O7964X-RAY DIFFRACTION10.585TORSIONAL
26Q7964X-RAY DIFFRACTION10.585TORSIONAL
27U7964X-RAY DIFFRACTION10.585TORSIONAL
28W7964X-RAY DIFFRACTION10.585TORSIONAL
31D8179X-RAY DIFFRACTION10.585TORSIONAL
32F8179X-RAY DIFFRACTION10.585TORSIONAL
33J8179X-RAY DIFFRACTION10.585TORSIONAL
34L8179X-RAY DIFFRACTION10.585TORSIONAL
35P8179X-RAY DIFFRACTION10.585TORSIONAL
36R8179X-RAY DIFFRACTION10.585TORSIONAL
37V8179X-RAY DIFFRACTION10.585TORSIONAL
38X8179X-RAY DIFFRACTION10.585TORSIONAL
41a162X-RAY DIFFRACTION10.585TORSIONAL
42m162X-RAY DIFFRACTION10.585TORSIONAL
43s162X-RAY DIFFRACTION10.585TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 30

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
2.75-2.78190.3742480.2994488473682
2.7819-2.81460.37012520.29825042529493
2.8146-2.84890.33272620.2945107536993
2.8489-2.8850.36872390.28575072531193
2.885-2.92290.34442760.28065052532893
2.9229-2.9630.33452470.27645109535693
2.963-3.00530.31242610.28115053531493
3.0053-3.05010.35012420.28485138538093
3.0501-3.09780.34292710.26984961523292
3.0978-3.14850.3462670.26374943521091
3.1485-3.20280.32032610.25444795505688
3.2028-3.2610.30982400.24764995523592
3.261-3.32370.28172650.23325129539493
3.3237-3.39150.29642910.23245047533893
3.3915-3.46520.272670.22395051531893
3.4652-3.54580.26482650.22015131539693
3.5458-3.63440.26042680.20895024529292
3.6344-3.73260.28522800.20214971525191
3.7326-3.84230.26422370.19294895513290
3.8423-3.96620.22742640.18064704496886
3.9662-4.10790.22112940.17235058535293
4.1079-4.27210.2182500.15815064531492
4.2721-4.46630.20292850.14334957524291
4.4663-4.70150.19322670.14354934520190
4.7015-4.99550.1872330.1394905513889
4.9955-5.38030.1952880.14834729501787
5.3803-5.92020.22442660.1644949521591
5.9202-6.77320.24462380.1744878511689
6.7732-8.51960.19172410.16784718495986
8.5196-39.72660.18532530.17024585483884
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
13.11221.22551.04613.1969-0.75823.54890.1851-1.05640.58020.5381-0.4739-0.4773-0.08750.44970.26730.4562-0.1786-0.10560.7927-0.07960.4104100.5667-241.9558-122.0167
28.3086-0.1512-2.52386.06-0.73990.92530.8077-0.3401-0.20850.463-0.4777-1.05040.05660.8899-0.1230.8843-0.1644-0.10040.94830.0420.772110.1883-266.0229-127.1196
32.5583-0.3343-1.92537.95252.39212.31420.0767-1.1793-0.31230.9608-0.1479-0.15360.6610.1910.05380.5939-0.09-0.04070.87810.06260.36699.097-254.6398-119.0569
41.7825-0.8793-0.02226.0921-0.78573.5663-0.4811-1.0175-0.73761.99860.58920.90391.37220.05480.02411.4135-0.03850.06831.16950.16580.440694.6999-265.2093-110.6634
56.67451.63421.77754.5573-2.23344.92470.0512-0.32620.56910.29310.0110.4943-0.1866-0.0976-0.09540.2607-0.00680.06650.4338-0.1390.426883.6089-242.8657-126.7857
64.9925-0.959-0.25410.4645-0.34941.57460.2263-0.23311.49550.098-0.08410.0996-0.72980.2017-0.14220.5627-0.09560.06920.392-0.0770.875886.8279-231.586-131.6973
75.55250.0858-0.31043.33010.60013.6803-0.1255-0.0174-0.31360.0941-0.1970.24060.49-0.31080.29650.3436-0.04210.00690.3406-0.07390.290882.9859-260.997-147.2406
87.6654-0.453.25053.7543-1.22298.0954-0.0405-0.1211-0.99980.4160.23340.28931.18660.62020.09380.62030.04440.00540.34640.02040.519989.3389-268.5661-137.9372
93.93360.1041-0.63270.96721.13852.4864-0.1535-0.1668-0.38850.14630.1585-0.20750.54790.2965-0.09390.38680.0628-0.01470.47930.05310.377499.2129-261.9204-144.8447
105.6822.8825-1.42343.1724-0.23641.4310.19770.6020.9159-0.22660.00630.2811-0.4909-0.1461-0.17090.48140.05520.04670.49780.1790.446788.5933-241.566-153.3145
118.152.5792-2.78781.8403-0.6122.8366-0.0699-0.2694-0.55270.0944-0.11730.18060.22910.16330.24120.35810.09050.0620.27890.00140.389756.2006-257.9327-127.142
124.11370.10420.57126.1144-0.6153.9394-0.1312-0.4519-0.1722-0.0662-0.00470.25440.3177-0.9270.20720.4096-0.05790.0640.55350.0060.303519.9083-256.376-117.6819
137.0096-2.2288-0.45447.5459-1.2124.9597-0.2706-1.54930.10161.11180.33581.1473-0.38150.03610.1310.4149-0.13790.12480.5987-0.30590.63550.2631-238.1526-110.5739
147.4977-1.6509-1.42222.96180.43785.86650.3602-0.53411.10390.0733-0.1499-0.0623-0.4490.2164-0.13060.4109-0.08980.12360.3866-0.12860.530154.8329-237.1953-118.6567
159.6015-2.085-4.12951.23290.35393.1346-0.0892-0.76670.49390.5230.1682-0.27220.16010.2061-0.15410.4439-0.07020.02040.6056-0.2460.481750.4199-242.4623-113.4473
162.5757-1.2033-0.96043.69-1.01142.9444-0.08630.00630.01080.22640.1448-0.05660.1397-0.02390.00730.3688-0.06330.00460.4350.01810.339124.175-253.6101-104.8544
172.87980.5025-3.01892.1935-3.56989.5755-0.3179-0.8409-0.16730.3151-0.4945-0.39090.35631.66890.54520.38830.0494-0.02070.9480.11750.546330.4629-257.1557-99.3454
183.59960.98-1.07055.81031.97532.93750.2458-0.6042-0.12620.4045-0.42760.00870.07950.02250.14630.31580.03430.01910.5515-0.02550.332525.9756-253.178-104.4479
198.51316.4596-6.1155.7064-6.18798.2618-0.39550.5574-0.14320.61380.84010.4352-0.6291-0.5823-0.37030.58760.03130.04150.75540.00790.559519.1373-250.0611-97.2954
202.70370.1234-0.35371.30571.02611.45930.0733-1.51550.62660.07730.1654-0.49340.09240.40360.06280.4270.02770.08610.51470.19390.3566133.8944-241.8167-139.2845
213.2571-0.4125-0.07092.2216-0.23761.3864-0.2179-0.3105-0.23790.09220.04370.0870.1665-0.0056-0.00740.3773-0.01150.00070.46210.19660.4024124.9082-244.4212-143.9109
222.1202-1.08630.69974.50340.00332.7685-0.0347-0.5817-0.4673-0.183-0.52950.99350.3795-0.40580.0490.51250.01350.09630.28480.58490.3638122.9113-253.0463-140.5379
234.9647-0.5196-0.47520.8942-0.92561.2456-0.0975-0.4209-0.07610.22170.05580.11670.04510.22760.01680.4394-0.021-0.01030.41510.16280.3674130.5282-244.5545-143.266
247.6558-2.20784.59252.7149-1.33422.73840.2581.78550.44960.253-0.05790.4913-0.24610.4344-0.21560.525-0.0945-0.04290.64650.02030.5292167.372-236.5421-163.6304
251.35260.64760.432.1428-2.19454.18320.4389-0.12340.60150.1091-0.13290.3279-0.7741-0.1471-0.35990.47430.08780.02890.24920.12550.6042157.3638-235.7513-151.7566
264.2148-0.13880.13741.13661.41463.96970.03140.18980.50720.40850.1444-0.5176-0.92110.0589-0.18480.3859-0.0165-0.03870.24420.11920.5536159.072-234.6462-158.5072
279.39115.52011.87547.0926-3.55816.06530.2981-1.0461.10060.7292-0.1336-0.1815-1.16030.97660.06580.50760.0056-0.06420.4068-0.02830.4654163.6147-232.7315-149.5101
283.41672.9822-2.98294.4723-5.81418.15720.11751.1905-0.6352-0.3615-0.6405-0.9903-0.0274-0.16990.64410.41370.12710.02830.55390.1140.4463129.6721-244.815-169.7883
294.01010.5185-0.27140.5966-0.65465.54750.01930.11820.13130.0701-0.1162-0.1232-0.12360.16840.08890.27230.0643-0.00140.35430.15590.3973122.8949-241.0925-163.982
306.6711.9222-3.66860.3871-0.66666.4009-0.37630.7345-0.6803-0.30720.0782-0.18070.7917-0.56150.24940.38090.18440.03040.39290.25470.5214130.4518-245.7027-163.5814
316.5669-1.01890.73773.055-2.10924.5277-0.21490.1325-0.2061-0.18540.31930.00330.192-0.2177-0.09490.3848-0.0442-0.02780.2190.0570.4128158.8759-245.8188-163.2837
322.5052-3.54723.5075.9838-4.20438.49160.11880.07260.0488-0.2824-0.3655-0.97030.39110.05910.58010.4134-0.01620.13580.53810.04760.6843166.1603-248.9782-169.7179
333.2917-0.0604-0.03245.2208-2.12235.2577-0.2501-0.60850.71450.5582-0.33490.2667-0.2788-0.24750.36520.2548-0.0715-0.01540.4164-0.21070.45957.5965-161.1964-47.3507
346.54811.3460.20454.70850.36043.4683-0.1205-0.32480.1634-0.05580.0784-0.38140.4960.51180.03540.37730.0391-0.05020.46190.01450.325972.9145-165.8131-53.4227
357.59241.56541.84247.15363.32936.9916-0.0573-0.4254-0.76240.6664-0.0643-0.30431.10010.53750.15680.5410.0655-0.04110.51160.0640.385667.7872-177.6437-51.6398
365.9253-0.21090.62121.7946-0.44343.45090.0353-0.9169-0.66160.208-0.10230.12831.06390.1212-0.14750.64710.04080.07590.45510.09270.280456.0496-177.684-48.2855
375.73623.8395-2.78366.5167-0.90782.47530.1993-0.10921.3586-0.14850.59711.3326-0.6125-0.1439-0.55890.41380.0305-0.05080.3715-0.0130.70651.0156-153.6676-60.3103
385.4295-0.41971.18922.4319-0.16282.23350.21480.02621.2532-0.0175-0.05420.1012-0.63330.0611-0.13440.40090.02610.02980.2764-0.03970.629653.6342-151.4995-60.0378
394.5910.26540.65273.8917-0.11781.78030.00960.6504-0.4534-0.0253-0.03980.14770.3975-0.31880.1620.3348-0.02-0.00480.5293-0.1450.261550.1529-179.4167-78.0306
402.32490.59750.59882.62760.21954.7596-0.09540.1658-1.2098-0.2263-0.26060.76740.5805-1.01620.81030.65310.093-0.00410.5995-0.14190.88655.0424-191.3388-66.5692
415.04430.17610.04795.09630.46513.4439-0.30610.2559-1.3305-0.0228-0.1078-0.86931.29970.32410.21840.79380.08850.20610.5628-0.10250.659864.5382-192.6983-72.5731
423.99191.6081-1.12463.47261.09311.9673-0.03860.98820.7917-0.42010.1552-0.2083-0.24590.0252-0.0330.4052-0.0293-0.01950.70030.22050.309259.8255-162.7257-80.7088
435.7591-0.3492-1.71188.2958-4.01588.0078-0.48960.8714-0.6721-0.90270.1916-0.18510.5025-0.15010.29240.298-0.0439-0.05010.3604-0.1880.322620.0089-177.7924-64.6704
445.57091.0875-1.21393.2503-0.31261.5028-0.17710.1413-0.5959-0.1174-0.01350.03520.17220.17530.18890.28570.05860.01130.1756-0.04070.258524.1958-177.9529-57.609
457.2042-1.10190.27966.0496-0.00094.0093-0.2863-0.0247-0.5568-0.09660.2790.20120.2703-1.01230.03520.3121-0.0464-0.00560.41960.06770.3649-12.7802-178.3043-49.1374
466.5432-5.1008-1.08638.4262-1.51075.44540.1895-1.13510.51250.9141-0.13640.5672-0.72130.76470.18430.360.0212-0.01030.1884-0.12870.656616.5377-160.1146-39.5078
473.75230.2119-1.9323.37890.22233.3203-0.0474-0.12620.9083-0.00430.03420.2103-0.42840.2522-0.04010.3888-0.0169-0.04690.1393-0.09110.447621.9413-159.0571-47.3608
489.17642.2633-1.4236.9801-1.84482.898-0.0208-1.3367-0.620.93560.0433-0.84650.13660.5705-0.08060.33010.0202-0.04580.4862-0.0580.375630.9163-170.3654-46.5802
496.4125-1.601-1.4870.46590.21560.4545-0.3794-1.00320.6890.41710.3822-0.26910.01820.3147-0.04720.47390.1389-0.06330.2698-0.0250.56682.3129-159.1912-38.4081
504.76011.7278-0.71118.476-2.4574.752-0.2681-0.4958-0.6191-0.2310.2861-0.02390.19-0.78290.00320.25290.07390.01030.47730.0520.3837-8.2269-178.0806-36.1146
510.76181.56220.41925.4807-3.25866.64290.428-0.74060.18690.2090.15290.47580.16190.1756-0.44420.3310.11720.00920.62050.10670.5402-1.5627-182.4415-31.7232
524.77022.0007-0.14046.5544-1.59733.05210.0067-0.4666-0.2563-0.06470.1640.34920.1921-0.4605-0.16380.2060.09390.02470.42660.02920.3354-6.3347-177.5653-35.5753
536.68773.5494-1.47313.1635-2.67925.08020.2006-0.56110.06820.79750.10891.76-0.2851-1.1729-0.06890.41220.20.01380.98890.15240.7676-12.4447-176.0174-27.572
547.3366-1.2487-1.86012.08170.71931.1573-0.2858-0.3361-0.16680.12190.09080.12890.15320.32510.15210.36260.02210.00830.60070.18520.346893.4527-165.0074-71.0821
554.8287-0.7474-1.04510.8395-0.93472.6481-0.1954-0.9395-0.20640.05530.2030.06250.21710.2682-0.00870.36250.0087-0.01050.69110.17770.412497.6938-162.6812-72.3051
566.0868-3.01222.38165.1893-0.79410.9705-0.63060.88430.4196-0.37680.2217-0.91950.1168-0.87010.05760.3732-0.1007-0.00110.79810.15760.6904131.5211-155.5917-86.5949
574.07662.0199-0.05972.569-1.75767.5202-0.4997-1.04250.8705-0.27340.26820.0376-1.5828-0.6766-0.62320.46180.21960.18020.6193-0.06610.7495122.2959-150.7017-78.471
584.6891.39071.94842.5708-1.3376.6602-0.1915-0.15560.88340.15430.472-0.3828-0.46-0.7064-0.47360.33760.08320.08870.58880.10020.6803121.2649-156.0113-84.5413
593.1577-1.236-0.33471.44950.82678.3726-0.30410.16682.2415-0.11360.2102-0.463-1.66080.86430.23660.6746-0.0728-0.12280.7770.41541.3682130.8049-148.1675-89.6878
606.96615.6546-4.56165.1461-3.77173.69830.49330.04830.61520.41840.5252-0.1361-0.1680.7462-1.22460.82660.03760.01311.1499-0.03011.0018131.0885-150.6538-78.2841
614.46822.5507-0.58597.7333-2.82075.6305-0.93161.33680.0371-0.60151.0073-0.3455-0.0593-0.2453-0.15420.4201-0.02740.01910.94080.13620.612896.8223-160.7106-98.5579
625.70330.962-1.11690.6452-0.93793.6603-0.19451.15440.6794-0.0594-0.02360.03740.1440.08350.2110.3959-0.0078-0.02890.73760.22390.414389.0758-157.9951-90.4183
633.1829-1.3674-0.73020.86130.27592.7058-0.20751.38830.6088-0.1718-0.0653-0.0466-0.0139-0.04560.2440.3795-0.089-0.07381.21280.37620.519391.4035-156.8805-95.4137
646.06251.0792-0.29718.5416-1.53135.3671-0.28120.861-1.6428-0.84080.22740.38280.7293-0.2130.06420.5157-0.0806-0.0550.94330.04350.405587.2668-169.4934-84.8398
650.0026-0.0276-0.01220.74150.30180.0892-0.79731.03050.3677-0.65460.0386-0.5194-0.03120.41380.58670.5525-0.09620.06721.7410.48630.663109.5118-153.9113-101.6662
664.1788-0.6102-2.99036.1799-0.47012.7359-0.2903-0.0283-0.1406-0.67330.3525-0.2187-0.0458-0.2395-0.07130.4137-0.06890.06910.75080.03330.4476127.7192-162.1369-92.9022
675.7715-0.8343-1.03261.810.50820.35710.36681.1340.5509-1.14790.143-1.33040.0868-0.6048-0.44420.71-0.18850.23640.8896-0.0350.6069125.5218-171.0497-92.845
685.045-1.73850.5542.9248-1.45042.0394-0.35220.04320.23790.29890.3510.1505-0.14240.23770.07440.5149-0.02360.16940.95960.04310.5315122.6571-159.5772-91.5244
697.978-4.66523.63737.0648-4.012.853-0.27860.37370.0542-0.3559-0.2845-0.8396-0.09650.32920.66850.5646-0.04590.1411.27530.02940.7037132.7389-166.0349-99.214
701.8134-0.44560.76715.4638-1.01863.1048-0.005-0.10160.44560.2569-0.1346-0.2635-0.25920.49240.1220.4187-0.1083-0.01070.3287-0.07970.382993.3915-166.2746-156.7269
716.0977-1.84050.84113.3728-1.03053.12550.0625-0.9087-0.01761.21220.0439-0.24850.24350.5902-0.12410.8208-0.0061-0.09370.5874-0.09740.413993.0181-176.4565-143.1601
723.00880.42980.99721.2513-0.01283.59090.02610.21770.2709-0.05290.02790.37850.0076-0.31980.01610.37420.05740.02640.2799-0.06890.562876.3491-168.1831-168.2592
733.89290.04250.08572.9580.50453.03340.02190.2655-0.2998-0.2273-0.00860.18120.2242-0.21470.06220.40240.0481-0.10360.2396-0.1020.368689.1745-194.7219-176.8396
744.86131.53972.01164.51532.87463.2608-0.0769-1.4007-0.13171.2493-0.87771.25580.9279-1.32670.06860.6613-0.03490.01190.4966-0.08980.551686.3611-196.0766-156.909
752.9733-0.0536-0.87963.4895-0.49533.6838-0.0895-0.3984-0.2840.32570.0191-0.20450.37680.49880.10810.45360.0664-0.05370.3678-0.1130.3771101.7218-193.7471-164.7637
769.9803-4.88510.44147.7189-2.65461.98360.4492.3754-0.0172-0.2317-0.82180.35650.78350.0011-0.40020.78770.0844-0.06480.3108-0.16250.270991.383-177.7403-184.3694
772.34430.36910.24144.8317-0.93190.48080.09770.83050.0011-0.57080.10490.5201-0.10190.0137-0.15780.42650.0587-0.1050.5253-0.04720.324787.2327-179.3806-186.6382
785.42860.06521.36463.3164-2.71054.16180.71520.9216-1.0412-0.7365-0.37120.09711.29770.23770.24530.6123-0.1166-0.14660.1358-0.20530.740754.7505-203.7764-162.2409
792.64020.3485-1.20894.0437-1.42854.34190.0716-0.1477-0.32070.19670.02190.22920.32810.2601-0.08690.4317-0.0518-0.04180.1999-0.10710.425861.2003-195.2318-158.3782
804.39871.9731-1.02151.6865-0.21522.0060.0791-0.2940.01950.23050.00510.04030.15480.1392-0.14230.5156-0.0158-0.04340.2296-0.0780.480755.2764-198.9489-159.0368
812.74843.378-0.35524.299-1.35415.91030.0422-0.01680.29731.3166-0.2621.4030.6822-1.9646-0.07770.5566-0.21020.14730.9208-0.23070.742121.2893-210.2116-154.1254
824.43651.81830.24995.1265-0.86624.9690.47190.6904-0.035-0.1235-0.48710.32250.8992-0.21750.13540.44420.1036-0.03490.5883-0.04690.406130.8597-210.511-161.8113
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912.3999-2.37120.62232.8781-1.20380.79450.7821.73431.17410.0724-1.61060.4105-0.0145-0.70820.59250.65150.02790.01151.1617-0.00080.893525.6376-191.4963-160.024
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947.32560.44730.78033.9001-0.19874.81660.0766-0.82780.76520.3863-0.13680.1157-0.2017-0.42660.01310.477-0.02250.06190.432-0.15090.3114120.8714-162.4846-170.9418
956.98651.8347-0.76824.6197-0.60536.50570.0435-0.2508-0.8409-0.1879-0.0036-0.01040.5946-0.2552-0.0640.46460.0164-0.08970.31890.03150.3373121.5437-172.4136-171.6676
966.97820.74580.61121.1697-0.04270.3724-0.023-0.48910.1166-0.05670.1496-0.1564-0.09710.0341-0.10520.47460.03330.04650.4486-0.12130.3487128.0664-163.8205-173.1782
978.9772-1.3034.51044.25240.70963.2890.17863.85421.1078-1.5384-0.0576-0.9789-0.02610.9211-0.46541.14340.06440.52121.35950.04551.3659164.8707-153.1827-196.3216
982.40860.21510.17644.54260.71715.97870.0290.01510.62870.45760.30170.4441-0.7693-0.6295-0.22180.48070.10090.18180.3832-0.04260.738150.5108-154.4835-180.9113
992.84441.4321.22776.28092.18743.72730.10140.2411.1881-0.26190.3251-0.8652-1.38330.7307-0.2930.86970.080.12170.5229-0.00381.1955157.977-148.7562-188.8296
1002.87591.6641.28263.8245-3.69677.2955-0.1462-0.34550.88790.61590.494-1.0938-1.88660.1258-0.4831.0185-0.11570.23340.5311-0.23981.1539156.7865-148.1193-177.2738
1017.67460.02280.51922.751-3.73498.9902-0.24011.6755-1.10640.0907-0.6271-0.52520.43660.77510.33020.7247-0.12320.14240.8387-0.30280.5012128.8023-172.338-196.6061
1027.18451.226-1.06341.6576-0.43343.5537-0.06181.0397-0.1137-0.46270.06020.0086-0.1672-0.0167-0.03430.51710.0015-0.02770.66760.00450.2745119.3983-168.3665-192.119
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1047.95381.0145-0.62282.91710.26682.95140.19431.19720.6084-0.67710.17470.445-0.56190.6459-0.170.47480.0426-0.01280.6146-0.00650.3954125.4805-163.8056-195.7626
1054.2239-0.281-0.02341.53910.5363.34360.13860.5194-0.251-0.3685-0.25290.13350.13230.20770.16170.5582-0.078-0.00870.6042-0.05410.405128.851-170.5643-191.3441
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1077.7027-1.34616.61062.0864-0.6446.12280.3016-0.0897-0.6281-0.45870.0227-0.12610.7536-0.3569-0.25570.6546-0.18280.24380.6084-0.05340.5174154.527-165.7954-192.3921
1082.86330.56071.54920.2985-0.29412.8305-0.45860.1044-0.934-0.51880.358-0.72831.3187-0.07130.3090.9409-0.02290.35810.559-0.25031.0831157.9958-172.0651-186.469
1094.36680.71941.13751.4017-1.12095.1811-0.05760.5823-0.3175-0.0459-0.0362-0.06630.0094-0.34310.11420.47940.01960.12740.5459-0.14920.5316152.4213-161.8677-188.6646
1105.9159-1.53050.7951.7989-1.38425.6186-0.47210.50680.6804-0.0167-0.4039-0.65770.72330.68620.43550.73070.14160.03350.6247-0.13730.8258166.6828-169.7202-188.3368
1114.6397-3.25274.12362.2355-2.89093.74740.01431.1216-0.05330.2049-0.1606-0.00660.30990.46260.04380.5923-0.00690.18351.0144-0.19220.9399163.9772-165.3267-196.1878
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1144.6417-3.85310.61237.4967-1.62722.42980.17850.72840.35990.2297-0.6878-1.16910.26980.95190.39970.8051-0.19720.0020.9648-0.11130.6226137.2581-203.9224-83.8925
1152.8196-0.7334-0.02585.0436-1.15134.2301-0.1499-0.2582-0.18320.66320.28420.1862-0.26520.441-0.05060.7414-0.096-0.00090.8391-0.26450.5168124.5083-203.4032-74.2266
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1174.72910.65690.18753.5517-0.07189.2127-0.12030.32680.7760.01960.1441.1466-0.7761-0.81370.1190.4762-0.0111-0.06220.5907-0.06790.9731103.6231-197.6287-101.4746
1184.42182.4010.50256.5719-0.39727.31880.32630.08831.18950.028-0.09631.1661-1.1809-0.0415-0.21380.59250.04010.01470.5307-0.04780.7747111.091-186.7567-99.145
1194.32821.16970.51363.6472-0.38552.7469-0.0543-0.0191-0.3725-0.02260.07340.15140.0958-0.13060.03240.4434-0.1202-0.02760.543-0.17310.4443119.0513-222.1173-104.5301
1204.29620.32710.24778.38250.93974.4812-0.6372-1.1885-0.44660.34150.66680.5512-0.61930.7873-0.02190.51190.0545-0.04160.7151-0.04580.4238124.9994-226.5672-88.4254
1214.5373-1.38942.31217.33340.47912.1296-0.3806-0.5418-0.19661.01180.1985-0.33580.06140.15020.15790.6936-0.12290.13140.8134-0.15410.4541133.2443-223.0484-91.2671
1226.1167-1.87041.66254.57560.3893.7675-0.3932-1.34610.25280.5765-0.4628-0.89361.2404-0.24970.61870.7067-0.0298-0.00440.7533-0.18620.6055138.2885-230.6353-90.7708
1233.5352-1.3387-0.6654.5142-0.11380.44360.13480.53690.2173-0.1687-0.0633-0.252-0.02620.0337-0.06250.6063-0.11750.0050.6002-0.09930.291128.9792-207.9704-108.1497
1240.78380.4281-0.56123.7594-0.28321.2295-0.29690.8610.3598-0.45960.29760.4872-0.4238-0.4624-0.03310.6401-0.0725-0.11330.96320.00690.4383118.1316-205.6921-116.8101
1257.83663.5435-3.31594.5633-1.5593.7126-0.0645-0.0719-0.43690.0092-0.18820.3380.14780.39940.1980.3628-0.02260.00790.7754-0.07580.567988.6968-224.0374-90.2868
1268.141.5754-0.0466.4428-0.62185.44130.0551-1.0141-1.07320.4237-0.359-0.14320.02621.04350.32420.5191-0.0180.09220.8490.02360.69292.6596-225.4391-85.1288
1278.39762.3583-2.51785.0619-3.16924.8616-1.02961.45340.9135-0.62471.09840.2237-0.00970.1244-0.12890.4319-0.1231-0.05430.7-0.18050.91189.5414-212.9807-94.6968
1287.9154.5528-2.00137.0236-2.70393.7266-0.4710.5736-2.57990.28980.1121-0.45371.1103-1.0727-0.05270.7725-0.2256-0.00970.7822-0.09931.618876.0323-238.6071-82.0088
1293.18591.16461.26890.67731.12972.0921-0.27490.9468-2.0124-0.5978-0.50550.18120.40860.5940.72150.9230.05280.00552.1056-0.14421.852158.4877-238.068-85.9833
1300.33690.2681-0.16138.3172.78191.1193-1.10181.1167-0.3709-0.48830.03731.7748-0.12420.67740.65291.08110.0147-0.0811.9520.28882.142154.4043-232.3333-96.0775
1315.4245-0.2305-3.56544.75882.75093.8111-0.3257-0.2497-0.99541.15350.60371.26451.30780.036-0.03121.1490.15960.3951.3630.21141.939866.2094-234.2078-78.4944
1320.5476-1.483-1.26683.99633.58043.1526-0.25740.0503-1.4948-0.8074-0.12482.90310.3923-2.30460.52211.1445-0.0795-0.24082.2617-0.25342.699946.1205-235.2878-92.132
1331.0008-0.81840.84050.7396-0.38161.82861.84350.5070.20510.13990.29340.62761.20250.8437-1.50931.09850.00430.19812.5038-0.10112.583256.7433-244.0846-89.6967
1342.1937-0.7436-1.08790.26830.40.88610.0344-0.56190.58850.59910.06522.6378-0.0823-0.2254-0.22050.467-0.14650.54041.1597-0.14832.892471.2805-204.6603-82.1986
1350.6670.9226-1.77541.2843-2.39184.45940.9712-1.27642.12821.17550.35841.4472-1.3444-0.5538-0.55180.6323-0.04240.33080.8744-0.68372.233581.6105-204.0125-83.3212
1364.92710.6437-2.68723.9269-1.52354.2318-0.0911.48712.3936-0.4910.48122.1527-0.4468-0.5634-0.60220.7248-0.0791-0.20480.91160.37011.870278.8779-207.1556-95.2854
1375.23011.5068-3.12562.9788-0.99352.41450.4699-0.61632.20.65860.13862.1432-0.7056-0.2545-0.53730.6349-0.16280.24780.8646-0.29532.288979.8888-205.0635-86.2328
1380.6208-0.18270.37280.111-0.14670.2435-0.00420.60061.1368-0.35510.33720.8659-0.4708-1.3335-0.00240.11870.02960.4081.86410.14863.457957.2432-210.6312-85.4035
1395.6585.6464-1.38486.8357-1.20725.3397-0.34280.8556-0.61221.25330.75171.5320.2722-0.8679-0.72470.9816-0.11970.45441.2714-0.07291.776949.6592-239.6465-78.598
1404.9928-0.24571.01352.0952.91434.50230.0986-0.33840.98110.4324-0.1120.8349-0.3297-0.50080.00110.8332-0.1930.24961.2386-0.01911.711652.8118-224.8542-76.485
1416.2572-0.37174.45252.0913-0.16813.161-0.58610.20750.41561.75850.06680.39750.764-2.82970.4771.3179-0.28290.47751.7574-0.45431.620255.1616-229.6995-68.8935
1421.9683-1.67880.53172.3551-0.62463.38620.1984-0.1056-0.93040.45760.99870.814-0.3114-1.2343-1.3310.5978-0.11190.06381.64930.04651.947255.8295-227.8508-80.622
1430.10630.04630.11050.0192-0.0250.14440.6725-2.25351.2556-0.18240.3146-1.1004-0.18430.0004-0.85961.4697-0.7720.26322.4018-0.00462.302346.9811-233.542-68.0815
1441.18520.84931.87942.4353-1.84038.8503-0.5031-0.21140.64321.01570.4344-0.02760.8519-2.27720.31471.54740.05410.99861.1092-0.17973.128843.2525-226.9606-74.036
1453.96580.27271.14944.78010.89292.53530.0246-0.2474-0.10450.12280.10360.08240.29410.2734-0.1240.5494-0.11680.0220.9113-0.1610.2649152.9319-194.0005-102.6533
1464.14861.64281.8561.8510.09941.47710.1324-0.6479-0.0088-0.15710.0889-0.01710.10280.2683-0.24370.6044-0.05640.01350.8133-0.15470.3719152.4387-193.4769-103.8257
1472.67351.7129-1.03620.758-0.71980.4136-0.1398-0.49030.6903-0.41160.2498-0.2007-0.0180.6265-0.23630.8087-0.31240.19371.2381-0.39440.6437176.0099-183.8074-113.4392
1482.02551.85031.25334.5448-2.74116.1494-0.39280.03030.1621-0.10420.3788-0.4981-0.4858-0.2394-0.11610.8081-0.27970.22311.2119-0.3550.7415181.0866-179.7523-115.5072
1492.73030.69221.31721.74780.51763.7977-0.1069-0.2856-0.1528-0.63931.1105-1.073-0.33570.7877-0.05491.4567-1.24630.34721.4152-1.0370.9836185.2467-177.7336-122.7014
1503.437-0.35352.7541.483-0.45212.247-0.0382-0.3046-0.2337-1.19070.3034-0.0892-0.23260.03730.32921.3893-0.42930.18841.2896-0.5730.7497185.3066-171.0167-115.5414
1514.69742.20483.02868.0114-3.96126.1770.41510.2263-0.79681.2022-1.69750.0936-0.0777-0.53571.00110.7997-0.28840.28931.0534-0.39560.902191.9165-172.733-114.4501
1525.00091.305-1.75632.2827-2.41553.3588-0.48010.4467-0.24-0.92260.3265-0.68631.21230.20240.0350.9377-0.09980.12260.6278-0.20930.4845158.8317-199.1187-128.6356
1533.9492-0.0367-2.39591.9060.70725.4677-0.18970.67850.0306-0.49330.1803-0.05220.1010.04680.00940.7978-0.26480.00390.7074-0.11920.3473149.66-195.2895-123.4956
1543.75730.3966-0.66351.18340.4343.633-0.14650.805-0.1476-0.54460.3249-0.15080.22080.0396-0.19230.8042-0.24240.07980.8024-0.21470.4409151.6143-198.1339-123.9572
1551.83621.7357-1.30052.0983-1.39090.9232-0.40720.41240.6213-0.49560.782-0.6039-0.1491.39120.25310.7683-0.27460.39191.4139-0.63611.0695183.4441-186.3756-125.0777
1560.741.1414-0.20586.2105-1.51893.4882-0.0376-0.7104-0.1015-1.39040.5571-0.12910.68511.561-0.24560.8863-0.17330.37581.3849-0.39130.8327184.2945-191.6061-126.007
1574.6656-2.7111-0.39347.49130.90714.1817-0.304-0.596-0.3208-0.57740.038-1.28540.05411.32370.13210.7601-0.18210.42351.0266-0.11581.0667188.1118-197.7415-120.1294
1586.7855-0.14380.5612.8963-0.65145.8819-0.53-2.1775-0.1539-0.21170.78020.1362-0.61990.7318-0.0141.0073-0.21690.43421.2411-0.4080.6884182.3876-187.5697-122.4301
1590.43371.8561-0.22487.645-0.97420.1095-0.133-3.9289-1.8499-0.00770.8479-0.64310.66580.496-0.36510.7328-0.11130.02742.5282-0.42191.1242196.9197-195.0656-122.9357
1604.3156-1.1218-1.48171.3168-1.07582.5048-0.4640.3649-0.62310.11110.5855-0.23910.88972.410.39531.2298-0.45910.65612.1065-0.7551.2925193.452-190.9701-130.5946
1613.95460.8393-4.90856.3281-3.3267.290.6022-0.9696-0.703-0.6857-1.42430.11690.65451.83740.46711.28030.2782-0.02061.19470.20331.692498.3942-272.8006-123.7245
1620.1163-0.13170.18880.1482-0.21250.29960.4667-0.12920.33651.1565-0.4399-0.0588-0.8060.4634-0.32831.49570.17960.16271.86510.03791.119468.7544-190.4605-52.5166
1635.84332.89950.2032.7179-0.9730.91470.53110.647-0.05810.0343-0.22881.13320.00310.84980.12511.5399-0.6761-0.39642.25050.44551.311699.1667-191.2031-145.7319
1640.1719-0.2190.25271.4969-0.7030.4498-0.60510.95210.072-0.32050.11790.0483-0.31350.15870.0781.3655-1.1896-0.40012.92340.88532.9658132.5245-218.7767-76.8178
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 4 through 89 )A0
2X-RAY DIFFRACTION2chain 'A' and (resid 90 through 135 )A0
3X-RAY DIFFRACTION3chain 'A' and (resid 136 through 178 )A0
4X-RAY DIFFRACTION4chain 'A' and (resid 179 through 230 )A0
5X-RAY DIFFRACTION5chain 'A' and (resid 231 through 285 )A0
6X-RAY DIFFRACTION6chain 'A' and (resid 286 through 350 )A0
7X-RAY DIFFRACTION7chain 'B' and (resid 4 through 98 )B0
8X-RAY DIFFRACTION8chain 'B' and (resid 99 through 178 )B0
9X-RAY DIFFRACTION9chain 'B' and (resid 179 through 285 )B0
10X-RAY DIFFRACTION10chain 'B' and (resid 286 through 352 )B0
11X-RAY DIFFRACTION11chain 'C' and (resid 4 through 128 )C0
12X-RAY DIFFRACTION12chain 'C' and (resid 129 through 225 )C0
13X-RAY DIFFRACTION13chain 'D' and (resid 2 through 19 )D0
14X-RAY DIFFRACTION14chain 'D' and (resid 20 through 91 )D0
15X-RAY DIFFRACTION15chain 'D' and (resid 92 through 116 )D0
16X-RAY DIFFRACTION16chain 'D' and (resid 117 through 153 )D0
17X-RAY DIFFRACTION17chain 'D' and (resid 154 through 166 )D0
18X-RAY DIFFRACTION18chain 'D' and (resid 167 through 201 )D0
19X-RAY DIFFRACTION19chain 'D' and (resid 202 through 217 )D0
20X-RAY DIFFRACTION20chain 'E' and (resid 4 through 20 )E0
21X-RAY DIFFRACTION21chain 'E' and (resid 21 through 55 )E0
22X-RAY DIFFRACTION22chain 'E' and (resid 56 through 76 )E0
23X-RAY DIFFRACTION23chain 'E' and (resid 77 through 128 )E0
24X-RAY DIFFRACTION24chain 'E' and (resid 129 through 144 )E0
25X-RAY DIFFRACTION25chain 'E' and (resid 145 through 166 )E0
26X-RAY DIFFRACTION26chain 'E' and (resid 167 through 203 )E0
27X-RAY DIFFRACTION27chain 'E' and (resid 204 through 225 )E0
28X-RAY DIFFRACTION28chain 'F' and (resid 3 through 19 )F0
29X-RAY DIFFRACTION29chain 'F' and (resid 20 through 91 )F0
30X-RAY DIFFRACTION30chain 'F' and (resid 92 through 116 )F0
31X-RAY DIFFRACTION31chain 'F' and (resid 117 through 189 )F0
32X-RAY DIFFRACTION32chain 'F' and (resid 190 through 217 )F0
33X-RAY DIFFRACTION33chain 'G' and (resid 4 through 30 )G0
34X-RAY DIFFRACTION34chain 'G' and (resid 31 through 99 )G0
35X-RAY DIFFRACTION35chain 'G' and (resid 100 through 178 )G0
36X-RAY DIFFRACTION36chain 'G' and (resid 179 through 262 )G0
37X-RAY DIFFRACTION37chain 'G' and (resid 263 through 285 )G0
38X-RAY DIFFRACTION38chain 'G' and (resid 286 through 350 )G0
39X-RAY DIFFRACTION39chain 'H' and (resid 5 through 98 )H0
40X-RAY DIFFRACTION40chain 'H' and (resid 99 through 152 )H0
41X-RAY DIFFRACTION41chain 'H' and (resid 153 through 230 )H0
42X-RAY DIFFRACTION42chain 'H' and (resid 231 through 352 )H0
43X-RAY DIFFRACTION43chain 'I' and (resid 1 through 28 )I0
44X-RAY DIFFRACTION44chain 'I' and (resid 29 through 128 )I0
45X-RAY DIFFRACTION45chain 'I' and (resid 129 through 225 )I0
46X-RAY DIFFRACTION46chain 'J' and (resid 3 through 19 )J0
47X-RAY DIFFRACTION47chain 'J' and (resid 20 through 91 )J0
48X-RAY DIFFRACTION48chain 'J' and (resid 92 through 104 )J0
49X-RAY DIFFRACTION49chain 'J' and (resid 105 through 116 )J0
50X-RAY DIFFRACTION50chain 'J' and (resid 117 through 153 )J0
51X-RAY DIFFRACTION51chain 'J' and (resid 154 through 166 )J0
52X-RAY DIFFRACTION52chain 'J' and (resid 167 through 201 )J0
53X-RAY DIFFRACTION53chain 'J' and (resid 202 through 217 )J0
54X-RAY DIFFRACTION54chain 'K' and (resid 5 through 76 )K0
55X-RAY DIFFRACTION55chain 'K' and (resid 77 through 128 )K0
56X-RAY DIFFRACTION56chain 'K' and (resid 129 through 154 )K0
57X-RAY DIFFRACTION57chain 'K' and (resid 155 through 166 )K0
58X-RAY DIFFRACTION58chain 'K' and (resid 167 through 184 )K0
59X-RAY DIFFRACTION59chain 'K' and (resid 185 through 203 )K0
60X-RAY DIFFRACTION60chain 'K' and (resid 204 through 225 )K0
61X-RAY DIFFRACTION61chain 'L' and (resid 3 through 19 )L0
62X-RAY DIFFRACTION62chain 'L' and (resid 20 through 62 )L0
63X-RAY DIFFRACTION63chain 'L' and (resid 63 through 91 )L0
64X-RAY DIFFRACTION64chain 'L' and (resid 92 through 104 )L0
65X-RAY DIFFRACTION65chain 'L' and (resid 105 through 116 )L0
66X-RAY DIFFRACTION66chain 'L' and (resid 117 through 153 )L0
67X-RAY DIFFRACTION67chain 'L' and (resid 154 through 166 )L0
68X-RAY DIFFRACTION68chain 'L' and (resid 167 through 189 )L0
69X-RAY DIFFRACTION69chain 'L' and (resid 190 through 217 )L0
70X-RAY DIFFRACTION70chain 'M' and (resid 4 through 135 )M0
71X-RAY DIFFRACTION71chain 'M' and (resid 136 through 230 )M0
72X-RAY DIFFRACTION72chain 'M' and (resid 231 through 350 )M0
73X-RAY DIFFRACTION73chain 'N' and (resid 2 through 81 )N0
74X-RAY DIFFRACTION74chain 'N' and (resid 82 through 135 )N0
75X-RAY DIFFRACTION75chain 'N' and (resid 136 through 262 )N0
76X-RAY DIFFRACTION76chain 'N' and (resid 263 through 285 )N0
77X-RAY DIFFRACTION77chain 'N' and (resid 286 through 352 )N0
78X-RAY DIFFRACTION78chain 'O' and (resid 3 through 20 )O0
79X-RAY DIFFRACTION79chain 'O' and (resid 21 through 76 )O0
80X-RAY DIFFRACTION80chain 'O' and (resid 77 through 128 )O0
81X-RAY DIFFRACTION81chain 'O' and (resid 129 through 154 )O0
82X-RAY DIFFRACTION82chain 'O' and (resid 155 through 166 )O0
83X-RAY DIFFRACTION83chain 'O' and (resid 167 through 197 )O0
84X-RAY DIFFRACTION84chain 'O' and (resid 198 through 212 )O0
85X-RAY DIFFRACTION85chain 'O' and (resid 213 through 225 )O0
86X-RAY DIFFRACTION86chain 'P' and (resid 2 through 19 )P0
87X-RAY DIFFRACTION87chain 'P' and (resid 20 through 104 )P0
88X-RAY DIFFRACTION88chain 'P' and (resid 105 through 116 )P0
89X-RAY DIFFRACTION89chain 'P' and (resid 117 through 153 )P0
90X-RAY DIFFRACTION90chain 'P' and (resid 154 through 166 )P0
91X-RAY DIFFRACTION91chain 'P' and (resid 167 through 177 )P0
92X-RAY DIFFRACTION92chain 'P' and (resid 178 through 191 )P0
93X-RAY DIFFRACTION93chain 'P' and (resid 192 through 217 )P0
94X-RAY DIFFRACTION94chain 'Q' and (resid 5 through 42 )Q0
95X-RAY DIFFRACTION95chain 'Q' and (resid 43 through 76 )Q0
96X-RAY DIFFRACTION96chain 'Q' and (resid 77 through 133 )Q0
97X-RAY DIFFRACTION97chain 'Q' and (resid 134 through 144 )Q0
98X-RAY DIFFRACTION98chain 'Q' and (resid 145 through 184 )Q0
99X-RAY DIFFRACTION99chain 'Q' and (resid 185 through 203 )Q0
100X-RAY DIFFRACTION100chain 'Q' and (resid 204 through 225 )Q0
101X-RAY DIFFRACTION101chain 'R' and (resid 2 through 19 )R0
102X-RAY DIFFRACTION102chain 'R' and (resid 20 through 62 )R0
103X-RAY DIFFRACTION103chain 'R' and (resid 63 through 76 )R0
104X-RAY DIFFRACTION104chain 'R' and (resid 77 through 91 )R0
105X-RAY DIFFRACTION105chain 'R' and (resid 92 through 116 )R0
106X-RAY DIFFRACTION106chain 'R' and (resid 117 through 131 )R0
107X-RAY DIFFRACTION107chain 'R' and (resid 132 through 153 )R0
108X-RAY DIFFRACTION108chain 'R' and (resid 154 through 166 )R0
109X-RAY DIFFRACTION109chain 'R' and (resid 167 through 189 )R0
110X-RAY DIFFRACTION110chain 'R' and (resid 190 through 200 )R0
111X-RAY DIFFRACTION111chain 'R' and (resid 201 through 217 )R0
112X-RAY DIFFRACTION112chain 'S' and (resid 4 through 55 )S0
113X-RAY DIFFRACTION113chain 'S' and (resid 56 through 81 )S0
114X-RAY DIFFRACTION114chain 'S' and (resid 82 through 135 )S0
115X-RAY DIFFRACTION115chain 'S' and (resid 136 through 230 )S0
116X-RAY DIFFRACTION116chain 'S' and (resid 231 through 262 )S0
117X-RAY DIFFRACTION117chain 'S' and (resid 263 through 305 )S0
118X-RAY DIFFRACTION118chain 'S' and (resid 306 through 350 )S0
119X-RAY DIFFRACTION119chain 'T' and (resid 2 through 97 )T0
120X-RAY DIFFRACTION120chain 'T' and (resid 98 through 154 )T0
121X-RAY DIFFRACTION121chain 'T' and (resid 155 through 211 )T0
122X-RAY DIFFRACTION122chain 'T' and (resid 212 through 230 )T0
123X-RAY DIFFRACTION123chain 'T' and (resid 231 through 285 )T0
124X-RAY DIFFRACTION124chain 'T' and (resid 286 through 351 )T0
125X-RAY DIFFRACTION125chain 'U' and (resid 4 through 55 )U0
126X-RAY DIFFRACTION126chain 'U' and (resid 56 through 100 )U0
127X-RAY DIFFRACTION127chain 'U' and (resid 101 through 115 )U0
128X-RAY DIFFRACTION128chain 'U' and (resid 116 through 128 )U0
129X-RAY DIFFRACTION129chain 'U' and (resid 129 through 163 )U0
130X-RAY DIFFRACTION130chain 'U' and (resid 164 through 174 )U0
131X-RAY DIFFRACTION131chain 'U' and (resid 175 through 186 )U0
132X-RAY DIFFRACTION132chain 'U' and (resid 187 through 203 )U0
133X-RAY DIFFRACTION133chain 'U' and (resid 204 through 225 )U0
134X-RAY DIFFRACTION134chain 'V' and (resid 3 through 19 )V0
135X-RAY DIFFRACTION135chain 'V' and (resid 20 through 39 )V0
136X-RAY DIFFRACTION136chain 'V' and (resid 40 through 62 )V0
137X-RAY DIFFRACTION137chain 'V' and (resid 63 through 104 )V0
138X-RAY DIFFRACTION138chain 'V' and (resid 105 through 116 )V0
139X-RAY DIFFRACTION139chain 'V' and (resid 117 through 131 )V0
140X-RAY DIFFRACTION140chain 'V' and (resid 132 through 153 )V0
141X-RAY DIFFRACTION141chain 'V' and (resid 154 through 166 )V0
142X-RAY DIFFRACTION142chain 'V' and (resid 167 through 189 )V0
143X-RAY DIFFRACTION143chain 'V' and (resid 190 through 200 )V0
144X-RAY DIFFRACTION144chain 'V' and (resid 201 through 217 )V0
145X-RAY DIFFRACTION145chain 'W' and (resid 5 through 76 )W0
146X-RAY DIFFRACTION146chain 'W' and (resid 77 through 108 )W0
147X-RAY DIFFRACTION147chain 'W' and (resid 109 through 143 )W0
148X-RAY DIFFRACTION148chain 'W' and (resid 144 through 184 )W0
149X-RAY DIFFRACTION149chain 'W' and (resid 185 through 197 )W0
150X-RAY DIFFRACTION150chain 'W' and (resid 198 through 212 )W0
151X-RAY DIFFRACTION151chain 'W' and (resid 213 through 225 )W0
152X-RAY DIFFRACTION152chain 'X' and (resid 2 through 19 )X0
153X-RAY DIFFRACTION153chain 'X' and (resid 20 through 62 )X0
154X-RAY DIFFRACTION154chain 'X' and (resid 63 through 104 )X0
155X-RAY DIFFRACTION155chain 'X' and (resid 105 through 131 )X0
156X-RAY DIFFRACTION156chain 'X' and (resid 132 through 153 )X0
157X-RAY DIFFRACTION157chain 'X' and (resid 154 through 166 )X0
158X-RAY DIFFRACTION158chain 'X' and (resid 167 through 189 )X0
159X-RAY DIFFRACTION159chain 'X' and (resid 190 through 200 )X0
160X-RAY DIFFRACTION160chain 'X' and (resid 201 through 217 )X0
161X-RAY DIFFRACTION161chain 'a' and (resid 1 through 20 )a0
162X-RAY DIFFRACTION162chain 'g' and (resid 3 through 16 )g0
163X-RAY DIFFRACTION163chain 'm' and (resid 2 through 20 )m0
164X-RAY DIFFRACTION164chain 's' and (resid 0 through 20 )s0

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る