PDB-4wp2: Chaetomium Mex67 UBA domain

ID or keywords:

Entry

Database: PDB / ID: 4wp2

Title

Chaetomium Mex67 UBA domain

Components

Putative mRNA export protein

Keywords

TRANSPORT PROTEIN / nuclear export factor

Function / homology

Function and homology information

poly(A)+ mRNA export from nucleus / RNA binding / nucleus
Similarity search - Function

Biological species

Chaetomium thermophilum (fungus)

Method

X-RAY DIFFRACTION /

SYNCHROTRON / Resolution: 1.7 Å

Authors

Aibara, S. / Stewart, M.

Funding support

United Kingdom, 1items

Citation

Journal: Acta Crystallogr.,Sect.F / Year: 2015
Title: Structural characterization of the principal mRNA-export factor Mex67-Mtr2 from Chaetomium thermophilum.
Authors: Aibara, S. / Valkov, E. / Lamers, M.H. / Dimitrova, L. / Hurt, E. / Stewart, M.

History

Deposition	Oct 17, 2014	Deposition site: RCSB / Processing site: PDBE
Revision 1.0	Jul 15, 2015	Provider: repository / Type: Initial release
Revision 2.0	Sep 13, 2017	Group: Advisory / Atomic model / Author supporting evidence Category: atom_site / pdbx_audit_support ...atom_site / pdbx_audit_support / pdbx_validate_close_contact / pdbx_validate_symm_contact Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _pdbx_audit_support.funding_organization / _pdbx_validate_close_contact.auth_seq_id_1 / _pdbx_validate_close_contact.auth_seq_id_2 / _pdbx_validate_symm_contact.auth_seq_id_1 / _pdbx_validate_symm_contact.auth_seq_id_2

Structure viewer	Molecule: MolmilJmol/JSmol

-
Download

PDBx/mmCIF format	4wp2.cif.gz	278.3 KB	Display	PDBx/mmCIF format
PDB format	pdb4wp2.ent.gz	243.5 KB	Display	PDB format
PDBx/mmJSON format	4wp2.json.gz		Tree view	PDBx/mmJSON format
Others	Other downloads

-
Validation report

Summary document	4wp2_validation.pdf.gz	446 KB	Display	wwPDB validaton report
Full document	4wp2_full_validation.pdf.gz	447.9 KB	Display
Data in XML	4wp2_validation.xml.gz	10.3 KB	Display
Data in CIF	4wp2_validation.cif.gz	17.7 KB	Display
Arichive directory	https://data.pdbj.org/pub/pdb/validation_reports/wp/4wp2 ftp://data.pdbj.org/pub/pdb/validation_reports/wp/4wp2	HTTPS FTP

-
Related structure data

Related structure data	4wp5C 4wp6C 4wpmC 4x2mC 4xm4C C: citing same article (ref.)
Similar structure data	3u4e-1 4d3c-d 1m5p-2 1m5v-2 7jn5-d 1maw-2 1mb2-1 6phb-1 1fpo-6 6y2x-d Search similar-shape structures by Omokage search (details) Similarity search - Function & homologyF&H Search Similarity search - FunctionF&H Search Similarity search - HomologyF&H Search

-
Links

PDB pages	PDBj / wwPDB / NCBI
Related items in Molecule of the Month	#143 - Nov 2011 Toll-like Receptors similarity (2) #248 - Aug 2020 Phytosulfokine Receptor similarity (2) #60 - Dec 2004 Ubiquitin similarity (1) #81 - Sep 2006 Elongation Factors similarity (1) #105 - Sep 2008 Ribonuclease A similarity (2) #245 - May 2020 Spliceosomes similarity (2) #44 - Aug 2003 Calmodulin similarity (1) #68 - Aug 2005 Neurotrophins similarity (1)

PDB pages

PDBj /

wwPDB /

NCBI

Related items in Molecule of the Month

#143 - Nov 2011
Toll-like Receptors
similarity (2)
#248 - Aug 2020
Phytosulfokine Receptor
similarity (2)
#60 - Dec 2004
Ubiquitin
similarity (1)
#81 - Sep 2006
Elongation Factors
similarity (1)
#105 - Sep 2008
Ribonuclease A
similarity (2)
#245 - May 2020
Spliceosomes
similarity (2)
#44 - Aug 2003
Calmodulin
similarity (1)
#68 - Aug 2005
Neurotrophins
similarity (1)

Deposited unit

A: Putative mRNA export protein

B: Putative mRNA export protein

C: Putative mRNA export protein

D: Putative mRNA export protein

E: Putative mRNA export protein

F: Putative mRNA export protein

G: Putative mRNA export protein

H: Putative mRNA export protein

54.3 kDa, 8 polymers
Search similar-shape structures of this assembly by Omokage search (details)

1

Idetical with deposited unit
defined by software
OCTAMERIC

Unit cell

Length a, b, c (Å)	95.903, 95.903, 74.967
Angle α, β, γ (deg.)	90.00, 90.00, 120.00
Int Tables number	152
Space group name H-M	P3₁21

Components on special symmetry positions

ID	Model	Components
1	1	G-709- HOH
2	1	H-704- HOH

#1: Protein	Putative mRNA export protein Mass: 6789.470 Da / Num. of mol.: 8 / Fragment: UNP residues 600-657 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Chaetomium thermophilum (fungus) / Strain: DSM 1495 / CBS 144.50 / IMI 039719 / Gene: CTHT_0059630 / Production host: Escherichia coli (E. coli) / References: UniProt: G0SET4
#2: Water	ChemComp-HOH / water Mass: 18.015 Da / Num. of mol.: 359 / Source method: isolated from a natural source / Formula: H₂O

-
Experiment

Experiment	Method: X-RAY DIFFRACTION

-
Sample preparation

Crystal	Density Matthews: 1.83 Å³/Da / Density % sol: 32.87 %
Crystal grow	Temperature: 291 K / Method: vapor diffusion, hanging drop Details: see publication for precise details. Cacodylate buffer employed.

-
Data collection

Diffraction	Mean temperature: 100 K
Diffraction source	Source: SYNCHROTRON / Site: Diamond / Beamline: I04-1 / Wavelength: 0.92 Å
Detector	Type: PSI PILATUS 6M / Detector: PIXEL / Date: Mar 30, 2013
Radiation	Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength	Wavelength: 0.92 Å / Relative weight: 1
Reflection	Resolution: 1.7→48 Å / Num. all: 734115 / Num. obs: 44143 / % possible obs: 100 % / Redundancy: 16.6 % / Net I/σ(I): 19.8

-
Processing

Software

Name: PHENIX / Version: (phenix.refine: 1.9_1692) / Classification: refinement

Refinement

Resolution: 1.7→41.527 Å / SU ML: 0.23 / Cross valid method: FREE R-VALUE / σ(F): 1.33 / Phase error: 27.14 / Stereochemistry target values: ML

	R_factor	Num. reflection	% reflection
R_free	0.2402	2217	5.04 %
R_work	0.1982	-	-
obs	0.2003	44030	99.78 %

Solvent computation

Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL

Refinement step

Cycle: LAST / Resolution: 1.7→41.527 Å

	Protein	Nucleic acid	Ligand	Solvent	Total
Num. atoms	3675	0	0	359	4034

Refine LS restraints

Refine-ID	Type	Dev ideal	Number
X-RAY DIFFRACTION	f_bond_d	0.006	3731
X-RAY DIFFRACTION	f_angle_d	1.051	5064
X-RAY DIFFRACTION	f_dihedral_angle_d	13.487	1377
X-RAY DIFFRACTION	f_chiral_restr	0.038	569
X-RAY DIFFRACTION	f_plane_restr	0.005	676

LS refinement shell

Resolution (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
1.7001-1.737	0.3654	160	0.2957	2574	X-RAY DIFFRACTION	100
1.737-1.7774	0.3868	142	0.2963	2594	X-RAY DIFFRACTION	100
1.7774-1.8219	0.2787	114	0.2683	2615	X-RAY DIFFRACTION	100
1.8219-1.8711	0.3097	124	0.2557	2603	X-RAY DIFFRACTION	100
1.8711-1.9262	0.3084	130	0.247	2586	X-RAY DIFFRACTION	100
1.9262-1.9884	0.2721	140	0.2353	2572	X-RAY DIFFRACTION	100
1.9884-2.0594	0.2714	149	0.2148	2595	X-RAY DIFFRACTION	100
2.0594-2.1419	0.2373	134	0.2076	2614	X-RAY DIFFRACTION	100
2.1419-2.2394	0.2395	142	0.1849	2590	X-RAY DIFFRACTION	100
2.2394-2.3574	0.2382	134	0.1865	2607	X-RAY DIFFRACTION	100
2.3574-2.5051	0.2325	138	0.1867	2614	X-RAY DIFFRACTION	100
2.5051-2.6985	0.1862	136	0.1921	2628	X-RAY DIFFRACTION	100
2.6985-2.97	0.2497	146	0.1897	2623	X-RAY DIFFRACTION	100
2.97-3.3996	0.229	155	0.1923	2617	X-RAY DIFFRACTION	100
3.3996-4.2824	0.2133	129	0.1674	2654	X-RAY DIFFRACTION	100
4.2824-41.5396	0.2247	144	0.1917	2727	X-RAY DIFFRACTION	98

Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	0.6133	0.4802	0.4167	1.2864	-0.1512	0.5806	0.5112	0.2753	0.6937	0.1832	-0.2631	-0.0921	-0.0946	-0.1164	0.384	0.2167	0.0869	0.035	0.2461	0.0432	0.3383	11.4485	24.1254	22.2711
2	1.0315	-0.1527	-1.3494	0.0812	0.192	2.0014	0.2119	0.1566	-0.325	0.2841	-0.2043	-0.5077	-0.2382	-0.1925	0.0425	0.2261	0.0119	-0.0759	0.1831	0.0045	0.3541	16.1488	14.7219	24.2651
3	0.1508	0.0915	0.0417	0.1363	-0.0405	0.0499	0.2347	-0.1096	-0.4177	0.2777	-0.1151	0.2077	0.09	0.0238	0.0006	0.3031	0.0245	-0.0308	0.3277	-0.0757	0.4824	26.1056	20.9065	25.14
4	3.054	0.1361	0.1095	0.0581	-0.0094	1.0896	-0.5842	0.0978	0.08	0.4936	0.2843	-0.095	-0.3708	-0.0866	-1.074	0.3625	0.1498	-0.097	0.2198	-0.029	0.2195	14.1732	33.5655	10.4879
5	0.1138	0.1429	-0.0745	0.1793	-0.093	0.0571	0.2003	-0.0462	-0.0807	0.3859	-0.0677	-0.1749	-0.1391	-0.0225	-0.1457	1.3724	0.2397	-0.2752	0.5566	-0.2141	0.6301	16.5578	39.6259	19.9448
6	0.6149	-0.2665	0.2015	0.1198	-0.1096	0.2276	0.2571	0.7317	0.1276	0.0557	-0.1614	0.112	-0.2138	0.0376	-0.012	0.2394	0.0397	0.0307	0.3276	-0.0283	0.1938	-3.2175	43.5659	2.5455
7	0.3554	0.4483	-0.0737	0.6505	-0.1588	0.2663	0.1343	0.7659	-0.5957	0.017	-0.155	-0.0956	0.0302	-0.0002	-0.1535	0.2261	0.0596	-0.0181	0.3476	-0.1331	0.2203	2.9514	36.257	0.7516
8	1.8238	0.2513	-2.3649	0.3381	-0.6504	3.4312	0.0109	0.3553	-0.1614	0.0888	0.4703	-1.0554	0.1007	-0.0612	1.7147	0.4585	-0.0251	-0.16	0.3295	-0.2336	0.6864	-4.6581	28.0816	-1.2646
9	0.6234	0.1632	-0.1348	0.0938	0.1349	0.3361	-0.1286	0.3083	-0.0337	0.0277	-0.1505	0.0953	0.0613	-0.3128	-0.2084	0.2007	0.0138	-0.024	0.2844	-0.0615	0.2033	-12.6735	44.9284	15.1914
10	0.0035	0.0314	-0.0004	0.1405	-0.0042	0.0046	-0.3089	0.2677	0.0936	-0.3412	0.2669	-0.2939	-0.6505	-0.0668	0.0037	0.5096	-0.0941	-0.181	0.919	0.2366	0.9225	-15.1963	53.3883	3.4393
11	1.203	0.0139	0.0354	0.054	-0.0424	0.3125	0.4504	0.3063	0.6682	0.0843	-0.1968	-0.234	-0.0144	-0.0259	0.0279	0.2665	0.029	0.0113	0.2099	-0.007	0.3629	-13.0922	65.2504	22.6997
12	0.3204	0.1434	0.0454	0.1518	0.2	0.2836	0.2091	-0.1144	0.022	0.123	-0.1096	-0.2475	0.1744	0.0222	0.0287	0.2207	0.0334	-0.0793	0.2374	-0.0215	0.2682	-8.2942	55.92	25.2821
13	0.0892	0.0389	-0.021	0.0222	0.0007	0.032	0.2281	-0.0639	-0.1659	0.3991	-0.4061	-0.0822	0.0872	0.4528	-0.0001	0.3776	-0.0144	-0.0823	0.3523	-0.0449	0.3445	1.9919	61.8409	26.1906
14	0.1842	-0.1407	-0.4025	0.7283	0.2297	0.9248	-0.2878	-0.3783	-0.1715	0.2921	-0.1116	-0.1113	-0.0189	-0.0757	-0.7939	0.351	0.2264	-0.0595	0.2035	0.0607	0.2657	-8.4986	68.6021	14.7108
15	1.7638	0.4253	0.3882	2.4265	1.8261	1.3733	-0.4649	-0.2643	-0.1105	0.4669	0.3025	0.4262	-0.4707	0.0302	-0.1433	0.4313	0.2197	0.009	0.2355	-0.0139	0.2654	-14.5292	75.7935	13.9919
16	0.0111	0.0065	-0.0145	0.0309	0.0009	0.0205	-0.2573	0.1293	-0.0005	0.0283	0.1181	-0.1486	-0.0292	-0.1325	-0.0003	0.1949	0.0148	0.049	0.1826	-0.0331	0.2662	-12.5417	70.9447	3.8655
17	0.527	0.3638	-0.074	0.3089	0.0179	0.1216	-0.5082	0.3831	0.3084	0.2624	0.2935	-0.6034	-0.3885	0.3064	-0.0928	0.2952	0.0165	-0.1147	0.2089	-0.0405	0.3637	-6.4066	80.2557	8.899
18	0	-0.0005	-0.0003	0.0002	0.0002	-0.0002	0.0391	-0.0003	-0.0701	0.0446	0.0139	0.0357	-0.076	-0.033	0.2578	1.1722	0.5714	0.1499	0.2914	-0.0905	0.4372	-15.1584	84.3715	19.2195
19	0.0127	-0.008	-0.0226	0.0436	0.0387	0.0587	0.0327	-0.0671	-0.0202	0.04	-0.0441	-0.0123	-0.0435	0.1687	-0.0682	1.0002	0.0181	-0.3895	0.7071	-0.0344	0.3809	-7.3309	79.4831	22.773
20	0.3751	0.2183	-0.1147	0.2584	-0.1721	0.4397	0.062	0.353	-0.3276	0.1577	-0.0801	0.1662	-0.1472	-0.0422	-0.0328	0.2194	0.0405	0.0018	0.2048	-0.0824	0.2775	-23.7753	81.0498	3.4398
21	0.0173	-0.1449	-0.0961	1.0767	0.6346	3.8134	-0.0236	0.9285	-1.2675	-0.3298	0.2601	-0.0653	-0.1533	-0.0092	0.2229	0.1663	0.0008	-0.0554	0.4008	-0.226	0.5523	-19.5815	73.7434	-4.2367
22	1.6397	0.1683	-1.1589	0.1754	-0.4448	1.5603	-0.3302	0.3447	0.0663	0.1638	0.4668	-0.8265	0.1007	0.0026	0.1169	0.3591	-0.0356	-0.1178	0.2608	-0.0754	0.5936	-30.9711	70.4044	-0.6719
23	0.0637	-0.0694	-0.0873	0.0748	0.0959	0.0921	0.0431	0.4101	-0.1427	-0.0288	-0.0967	-0.1744	0.0923	-0.0765	-0.0003	0.2227	0.0357	-0.0115	0.2177	-0.0518	0.191	-32.0623	82.7386	11.1188
24	1.9144	0.2393	1.8951	1.1407	-0.1374	1.9867	0.1477	0.1397	0.5257	-0.3584	-0.575	-0.1612	-0.633	-0.6351	-0.4717	0.2863	0.154	-0.016	0.2526	0.0315	0.1831	-35.3487	91.6733	11.2315
25	0.0139	-0.002	-0.0146	0.0255	0.0086	0.0203	0.163	-0.1785	-0.0127	0.0444	-0.2576	0.0487	0.0185	-0.2214	0	0.2127	0.0104	-0.0146	0.2534	0.016	0.2153	-31.5872	88.0611	21.4716
26	0.7259	-0.1078	0.1667	0.9674	0.5772	0.4164	0.3832	-0.3066	-0.2119	-0.0431	-0.5289	0.2441	-0.0107	-0.9275	-0.0341	0.1942	0.017	-0.0537	0.4329	-0.091	0.2991	-42.8974	87.1433	16.9829
27	0.1739	-0.0746	0.0238	0.0311	-0.01	0.0038	-0.0227	0.0391	0.0765	-0.0096	-0.0399	-0.0716	-0.0677	-0.0178	-0.0316	0.7522	0.5249	-0.1886	0.7389	0.2031	0.6393	-43.1448	95.7939	5.66
28	0.5222	0.2147	-0.2484	0.0895	-0.1008	0.1175	-0.1137	0.2999	-0.2155	-0.2063	-0.3085	-0.0082	0.2656	-0.353	-0.025	0.9296	0.0329	-0.2458	0.955	-0.1555	0.5004	-41.8153	83.4626	3.9852

Refinement TLS group

ID	Refine-ID	Refine TLS-ID	Selection details
1	X-RAY DIFFRACTION	1	chain 'A' and (resid 597 through 613 )
2	X-RAY DIFFRACTION	2	chain 'A' and (resid 614 through 645 )
3	X-RAY DIFFRACTION	3	chain 'A' and (resid 646 through 657 )
4	X-RAY DIFFRACTION	4	chain 'B' and (resid 600 through 645 )
5	X-RAY DIFFRACTION	5	chain 'B' and (resid 646 through 657 )
6	X-RAY DIFFRACTION	6	chain 'C' and (resid 597 through 613 )
7	X-RAY DIFFRACTION	7	chain 'C' and (resid 614 through 641 )
8	X-RAY DIFFRACTION	8	chain 'C' and (resid 642 through 657 )
9	X-RAY DIFFRACTION	9	chain 'D' and (resid 600 through 645 )
10	X-RAY DIFFRACTION	10	chain 'D' and (resid 646 through 657 )
11	X-RAY DIFFRACTION	11	chain 'E' and (resid 597 through 613 )
12	X-RAY DIFFRACTION	12	chain 'E' and (resid 614 through 645 )
13	X-RAY DIFFRACTION	13	chain 'E' and (resid 646 through 657 )
14	X-RAY DIFFRACTION	14	chain 'F' and (resid 600 through 613 )
15	X-RAY DIFFRACTION	15	chain 'F' and (resid 614 through 624 )
16	X-RAY DIFFRACTION	16	chain 'F' and (resid 625 through 631 )
17	X-RAY DIFFRACTION	17	chain 'F' and (resid 632 through 645 )
18	X-RAY DIFFRACTION	18	chain 'F' and (resid 646 through 650 )
19	X-RAY DIFFRACTION	19	chain 'F' and (resid 651 through 655 )
20	X-RAY DIFFRACTION	20	chain 'G' and (resid 597 through 631 )
21	X-RAY DIFFRACTION	21	chain 'G' and (resid 632 through 645 )
22	X-RAY DIFFRACTION	22	chain 'G' and (resid 646 through 657 )
23	X-RAY DIFFRACTION	23	chain 'H' and (resid 600 through 613 )
24	X-RAY DIFFRACTION	24	chain 'H' and (resid 614 through 624 )
25	X-RAY DIFFRACTION	25	chain 'H' and (resid 625 through 631 )
26	X-RAY DIFFRACTION	26	chain 'H' and (resid 632 through 645 )
27	X-RAY DIFFRACTION	27	chain 'H' and (resid 646 through 650 )
28	X-RAY DIFFRACTION	28	chain 'H' and (resid 651 through 657 )

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

Thousand views of thousand structures

Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

-Movie

-Structure viewers

+Viewer log

-This page

-This web site

-Options

+Open data

-Basic information

-Structure visualization

-Downloads & links

-Download

-Validation report

-Related structure data

-Links

-Assembly

-Components

-Experimental details

-Experiment

-Sample preparation

-Data collection

-Processing

+About Yorodumi

-News

-Feb 9, 2022. New format data for meta-information of EMDB entries

-Aug 12, 2020. Covid-19 info

+Mar 5, 2020. Novel coronavirus structure data

+Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+Jul 12, 2017. Major update of PDB

-Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi