- PDB-4usc: Crystal structure of peroxidase from palm tree Chamaerops excelsa -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4usc
Title
Crystal structure of peroxidase from palm tree Chamaerops excelsa
Components
PEROXIDASE
Keywords
OXIDOREDUCTASE / PLANT PEROXIDASE / GLYCOSYLATION
Function / homology
Function and homology information
peroxidase / hydrogen peroxide catabolic process / peroxidase activity / response to oxidative stress / heme binding / extracellular region / metal ion binding Similarity search - Function
Plant peroxidase / Secretory peroxidase / Peroxidase; domain 2 / Peroxidase, domain 2 / Peroxidase; domain 1 - #10 / Peroxidase; domain 1 / Peroxidases heam-ligand binding site / Peroxidase, active site / Peroxidases active site signature. / Plant heme peroxidase family profile. ...Plant peroxidase / Secretory peroxidase / Peroxidase; domain 2 / Peroxidase, domain 2 / Peroxidase; domain 1 - #10 / Peroxidase; domain 1 / Peroxidases heam-ligand binding site / Peroxidase, active site / Peroxidases active site signature. / Plant heme peroxidase family profile. / Haem peroxidase / Peroxidase / Peroxidases proximal heme-ligand signature. / Haem peroxidase superfamily / Orthogonal Bundle / Mainly Alpha Similarity search - Domain/homology
PROTOPORPHYRIN IX CONTAINING FE / alpha-D-mannopyranose / DI(HYDROXYETHYL)ETHER / HYDROGEN PEROXIDE / Peroxidase Similarity search - Component
Resolution: 2.6→80.11 Å / Cor.coef. Fo:Fc: 0.949 / Cor.coef. Fo:Fc free: 0.934 / SU B: 24.103 / SU ML: 0.258 / Cross valid method: THROUGHOUT / ESU R: 0.547 / ESU R Free: 0.295 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES WITH TLS ADDED
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.24585
1369
5.1 %
RANDOM
Rwork
0.21816
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obs
0.21964
25246
90.14 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK