negative regulation of glucosylceramide biosynthetic process / positive regulation of mitochondrial transcription / [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase / [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity / : / regulation of stress granule assembly / histone H2BS36 kinase activity / regulation of peptidyl-serine phosphorylation / cold acclimation / positive regulation of peptidyl-lysine acetylation ...negative regulation of glucosylceramide biosynthetic process / positive regulation of mitochondrial transcription / [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase / [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity / : / regulation of stress granule assembly / histone H2BS36 kinase activity / regulation of peptidyl-serine phosphorylation / cold acclimation / positive regulation of peptidyl-lysine acetylation / lipid droplet disassembly / regulation of bile acid secretion / positive regulation of skeletal muscle tissue development / CAMKK-AMPK signaling cascade / regulation of vesicle-mediated transport / positive regulation of cholesterol biosynthetic process / nucleotide-activated protein kinase complex / : / Energy dependent regulation of mTOR by LKB1-AMPK / negative regulation of hepatocyte apoptotic process / tau-protein kinase / bile acid and bile salt transport / cellular response to ethanol / negative regulation of TOR signaling / protein localization to lipid droplet / bile acid signaling pathway / response to caffeine / motor behavior / positive regulation of protein targeting to mitochondrion / lipid biosynthetic process / cAMP-dependent protein kinase activity / AMP-activated protein kinase activity / negative regulation of tubulin deacetylation / tau-protein kinase activity / Macroautophagy / positive regulation of protein localization / cholesterol biosynthetic process / fatty acid oxidation / fatty acid homeostasis / cellular response to nutrient levels / negative regulation of lipid catabolic process / positive regulation of autophagy / regulation of microtubule cytoskeleton organization / cellular response to glucose starvation / Activation of AMPK downstream of NMDARs / response to UV / energy homeostasis / negative regulation of insulin receptor signaling pathway / negative regulation of TORC1 signaling / positive regulation of adipose tissue development / cellular response to calcium ion / positive regulation of glycolytic process / response to activity / response to gamma radiation / TP53 Regulates Metabolic Genes / cellular response to glucose stimulus / tau protein binding / regulation of circadian rhythm / Wnt signaling pathway / fatty acid biosynthetic process / autophagy / cellular response to hydrogen peroxide / neuron cellular homeostasis / response to estrogen / cellular response to prostaglandin E stimulus / glucose metabolic process / cellular response to xenobiotic stimulus / rhythmic process / glucose homeostasis / cellular response to oxidative stress / cellular response to hypoxia / Regulation of TP53 Activity through Phosphorylation / response to hypoxia / non-specific serine/threonine protein kinase / protein kinase activity / nuclear speck / apical plasma membrane / axon / protein phosphorylation / negative regulation of gene expression / protein serine kinase activity / protein serine/threonine kinase activity / neuronal cell body / dendrite / chromatin binding / positive regulation of cell population proliferation / positive regulation of gene expression / chromatin / negative regulation of apoptotic process / positive regulation of DNA-templated transcription / signal transduction / nucleoplasm / ATP binding / nucleus / metal ion binding / cytosol / cytoplasm Similarity search - Function
PRKAA1, UBA-like autoinhibitory domain / 5'-AMP-activated protein kinase alpha 1 catalytic subunit, C-terminal / : / AMP-activated protein kinase, alpha subunit, autoinhibitory domain / AMPK, C-terminal adenylate sensor domain / Adenylate sensor of SNF1-like protein kinase / KA1 domain/Ssp2, C-terminal / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain ...PRKAA1, UBA-like autoinhibitory domain / 5'-AMP-activated protein kinase alpha 1 catalytic subunit, C-terminal / : / AMP-activated protein kinase, alpha subunit, autoinhibitory domain / AMPK, C-terminal adenylate sensor domain / Adenylate sensor of SNF1-like protein kinase / KA1 domain/Ssp2, C-terminal / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily Similarity search - Domain/homology
Mass: 18.015 Da / Num. of mol.: 30 / Source method: isolated from a natural source / Formula: H2O
-
Experimental details
-
Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
-
Sample preparation
Crystal
Density Matthews: 2.4 Å3/Da / Density % sol: 48.64 %
Crystal grow
Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: 0.5 M HNa2PO4/0.5 M HK2PO4, 0.1 M Tris hydrochloride, pH 8.5, 0.1 M H(NH4)2PO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Resolution: 2.95→29.9 Å / Cor.coef. Fo:Fc: 0.926 / Cor.coef. Fo:Fc free: 0.897 / SU B: 19.358 / SU ML: 0.363 / Cross valid method: THROUGHOUT / ESU R Free: 0.489 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.27681
1222
7.3 %
RANDOM
Rwork
0.2297
-
-
-
obs
0.23312
15630
99.75 %
-
all
-
15669
-
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parameters
Biso mean: 72.763 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-2.01 Å2
0 Å2
-0 Å2
2-
-
-2.01 Å2
0 Å2
3-
-
-
4.03 Å2
Refinement step
Cycle: LAST / Resolution: 2.95→29.9 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
5293
0
0
30
5323
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.009
0.019
5412
X-RAY DIFFRACTION
r_bond_other_d
0.011
0.02
5212
X-RAY DIFFRACTION
r_angle_refined_deg
1.445
1.969
7315
X-RAY DIFFRACTION
r_angle_other_deg
0.89
3
12027
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.799
5
654
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
37.604
23.92
250
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
16.654
15
971
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
20.084
15
32
X-RAY DIFFRACTION
r_chiral_restr
0.069
0.2
806
X-RAY DIFFRACTION
r_gen_planes_refined
0.006
0.021
6006
X-RAY DIFFRACTION
r_gen_planes_other
0.002
0.02
1218
X-RAY DIFFRACTION
r_mcbond_it
4.787
7.129
2631
X-RAY DIFFRACTION
r_mcbond_other
4.787
7.129
2630
X-RAY DIFFRACTION
r_mcangle_it
7.384
10.688
3280
X-RAY DIFFRACTION
r_mcangle_other
7.383
10.688
3281
X-RAY DIFFRACTION
r_scbond_it
4.863
7.548
2778
X-RAY DIFFRACTION
r_scbond_other
4.856
7.548
2778
X-RAY DIFFRACTION
r_scangle_other
7.386
11.185
4035
X-RAY DIFFRACTION
r_long_range_B_refined
12.426
66.794
21526
X-RAY DIFFRACTION
r_long_range_B_other
12.425
66.794
21526
LS refinement shell
Resolution: 2.949→3.025 Å / Total num. of bins used: 20
Rfactor
Num. reflection
% reflection
Rfree
0.301
86
-
Rwork
0.288
1122
-
obs
-
-
99.42 %
+
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